Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1491 ATGGTGAAGCAGAGCATGGTTAAGGTTGAGGAGAAACATGATTCTTCTTCCATTTACAGAGGTGTTAGAAAGAGGAAGTGGGGTAAATATGTCTCTGAAATCAGATTACCCAACAGCCGCCAGAGAATCTGGCTCGGGTCTTACGATTCTGCTGAGAAGGCGGCGCGTGCATTCGACGCTGCCATGTTCTGTTTACGCGGCCGCAGCGGGAGGTTCAATTTCCCGGACAACCCGCCAGACATCGCCGGCGGGAGGTCTATGACGCCGCCTCAGATTCAAGCCGCCGCCGCCCATTTCGCCAACACGGAGTCGGGCCAAGACAGCCGTGACACTCACCCGGGTCGACCCGAACCAGCTGAATCGGGTGTGGTTTCTTCTTCTTCGGAGGGAACGGCGTTGGTGGGTATGGAGGAGTCTCCGTCGCCTTGTGTTTCTGAGGTGACGGTTCAAACGGACAGTGACGGCGGCGTGAACAACGGGTTGCTGCCGGATTTGTTTGCGCCGATCGGGTCGGGTGATTTTGGATCGGGTTATGGGCTTTTTCCTGGGTTTGATGAATTTAGCGGCGATTTTTATGTGCCGGAATTGGAGAGCCTTAACTATTGTGAAGAAGAAAACACGGATGGGTACATAATCGAGGACTCTTTTTTGTGGAATTTCTGA 663 0.5339 MVKQSMVKVEEKHDSSSIYRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSAEKAARAFDAAMFCLRGRSGRFNFPDNPPDIAGGRSMTPPQIQAAAAHFANTESGQDSRDTHPGRPEPAESGVVSSSSEGTALVGMEESPSPCVSEVTVQTDSDGGVNNGLLPDLFAPIGSGDFGSGYGLFPGFDEFSGDFYVPELESLNYCEEENTDGYIIEDSFLWNF* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1491 220 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Lja4g1491 220 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Lja4g1491 220 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Lja4g1491 220 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Lja4g1491 220 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Lja4g1491 220 MobiDBLite consensus disorder prediction 97 140 - -
Lja4g1491 220 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 220 - -
Lja4g1491 220 PANTHER TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED 5 220 - -
Lja4g1491 220 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Lja4g1491 220 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Lja4g1491 220 CDD AP2 17 77 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1491 Lja-Chr4 13803024 13804095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1491 17 220 AP2-EREBP Transcription Factor Family AT1G19210 45.673 5.51e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja4g1491 AP2 5.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1491 - - gmx:732656 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1491 4 13803024 13804095 Lja4g1491 4 13803024 13804095 ECH