Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1489 ATGAAGGCTCCATCCAATTGTTACTTGCCAAATTCTGGTGAAGGGGAAAGGAAGACCATCAATTCAGAATTATGGCATGCTTGTGCTGGACCTTTGGTTTCTTTGCCTCCTGTTGGAAGTCTTGTGGTTTACTTCCCGCAAGGACACAGTGAGCAAGTTGCAGCTTCCATGCAAAAGGAGACTGACTTCATACCCAGTTACCCTAACCTTCCCTCCAAGTTGATTTGCATGCTTCACAATGTTGCGCTGCATGCTGATCCTGAAACTGACGAAGTCTATGCACAAATGACCCTTCAGCCTGTAAACAAATATGATAAGGATGCAATACTGGCATCAGACATGGGTCTCAAACAAAACCGACAACCTACAGAGTTCTTTTGCAAAACTCTTACAGCTAGTGATACAAGCACTCATGGTGGATTTTCTGTGCCTCGTAGAGCAGCTGAGAAAATATTCCCCCCCTTGGATTATTCTATGCAACCTCCCGCTCAGGAGCTTGTTGCCAAAGATTTGCACGACACTACATGGTCATTTAGACATATTTATCGGGGACAACCAAAGAGGCATCTGTTGACTACTGGTTGGAGTGTATTTGTCAGCACAAAAAGACTATTTGCTGGAGATTCTGTTCTTTTTATCAGAGATGAAAAACAGCAACTTCTTTTAGGCATAAGGCGTGCTAATAGACAGCAACCAGCACTTTCTTCATCAGTAATATCCAGTGACAGCATGCACATTGGCATTCTTGCTGCAGCAGCTCATGCTGCTGCAAATAACAGCCCATTTACTATATTTTACAATCCAAGGGCCAGCCCCTCAGAATTCGTTATTCCATTGGCCAAGTTTAACAAAGCCATGTACACTCAAGTTTCTCTAGGGATGAGATTTAGGATGATGTTCGAAACAGAGGAGTCTGGAGTACGCAGACATATGGGTACAATCACTGGGATTAGTGACTTGGATTCTGCCCGATGGAAAAGTTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGCCCGAGCAGAGTTTCAATTTGGGAAATTGAACCAGTAGTGACTCCTTTCTATATTTGTCCACCTCCATTTTTTAGGCCTAAGTTTCCCAGACAACCAGGAATGCCAGATGACGAGTCTGATATAGAAAATGCTTTTAAGAGAGCTATGCCATGGCTTGGGGATGACTTTGGCATGAAGGATGCCTCAGGTTCAATCTTCCCTGGTTTGAGTTTAGTGCAGTGGATGAGCATGCAGCAGAATAATCAGTTCTCTGCTGCTCAATCAGGATGTTTCCCACCCATGCTTTCTCCTAATACTCTGCATAGTAACCTTGGCACGGATGACCCATCCAAGCTACTCAGCTTTCAAGCTCCTGCCCTCTCTGCACCAAGTCTTCAATTTAATAAACCTAATTTACCAAACCAAATCAACCAGCTGCACCAGTCCCCAGTATCATGGCCTCAGCAGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAGCAGCAGCAGCTACAGCTGCAACATCAACAGCAGCAGCAGCAGCTACAACAACAGCAACAACAACAACAGCAGCAGCAGTTACAGCAACAGCAACAACAGCAGTTACAGCAACAGCAATCACAACAGCAACAGCTACAGTCATTGTTGCAAATACCAATGAACCAGCTCCAGCAACCAAGGCAACAACAGCTGCCTGAACCCAAGAACTTGCCATTGCCGCAGCAACAATTGCCTCAGCAGCTAGGACAGCAGTCACAAAAAGCTATTATGAGTAATGGTGTAGTTGCTTCTAACCAGATTACAAATCAGCTTGTACTTCAGCAACAGCAATTGCTCTCGGGAGGTATCTCACCACAACAAAGTATTCACTCAGCTAGTAAGACTACATTCCCACTCACATCCCTACCACAAGAATCGCAATTTCTGCAACAAATCGACCAGCAAGCTAGCCTCTTACAGAGGCAGCAGCTTCCCCAACAGACACAGTTGCAACAATCTTCACTGCATTTGTTGCAACAAAACCAGCCACAGAGGGCACCACAACAGCCACCAGTGGCTACAATGTCGCAGCAAACTCCCTCAGAGCAACAGCTACACCTACAGTTACTACAGAAATTGCAGCAGCATCAGCAGCACCAACAACTTCTTTCCACATCTAGCCCGCTTTTGCAGCCTCAGCTTCTGCAACAACAAAGTACTCCCCAACAAAACCAGCAATTAACACAGCTGCCTGCATCTCAGCATCAGACTCAACAGCTTGGGAATAATGCATTTTCAACAGAGAAGGTACTCAATAGCAACAGCTTCTCTTCTTCTCTTATGCAACCACACCAGCTTCCTGTGAACCACCCCCAGAATACACAGAAATCGCTTGCAATCACTAGAGCCCCCTCTACACTTACAGATGGAGATGCCCCATCATGCTCAACCTCTCCATCTACTAATAACTGCCAGATATCTCCATCAAATCTCCTGAAAAGAAATCAACAAGTACCTGCTACATTAGGGGGTAGTTTGGTAGTGGAGTCCACTAGTAATCTGATACAGGAGCTTCAGAGTAAGTCTGACATGCAGATAAAAAATGAGTTCTCAAATGTGAAAGGGTTTGACCAGCTTAAGTATAAAGGGACAATCACTGATCAGATGGAAGCTTCTTCTTCTGGAACATCTTACTGTCTTGATCCTGGTAATGTCCAGCAGAGCTTACCACTTTCCAACTTTTGTATGGAAGGGGATGTCCAATCACACTCTAGAAGCAATCTACCATTTGACTCTAATCTTGATGGTCTAACGCCTGATCCTGTGCTTATGAGGGGGTATGATTCTCAGAAAGATCTTCAAAACATGTTGTCTAATTATGGTGGTGCCCCGAGAGACATTGAAACTGAGCTGTCAACTGCTGACATCAGCTCACAGTCGTTTGGAGTGCCAAACATGACTTTTAATCCTGGTTGCTCAGGTGATGTTGGCATTAATGATACTGGGGTTTTAAATAATGGCTTGCGGGCTAACCAAACTCAACGAATGCGAACATATACTAAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGTATTGATGTCACCCGCTACAAGGGCTACGACGAACTCCGGAATGATTTGGCTCGAATGTTTGGCATTGAAGGGCAGCTTGAAGATCCTCAAAGGACTGACTGGAAATTGGTATATGTAGATCATGAAAATGACATTCTTCTTGTTGGTGATGACCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAGATACTGTCATATACTGAGGTGCAGCAAATGAGCTTGGATGGAGATTTAGGTAACGTTCCAATCCCCAATCAAGCTTGCAGTGGCACAGACAGTGGCAATGCATGGAGGGGACCGTATGATGATAACTCTGCAGCCTCGTTTAATAGATAA 3429 0.4497 MKAPSNCYLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKETDFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKDAILASDMGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVAKDLHDTTWSFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKFNKAMYTQVSLGMRFRMMFETEESGVRRHMGTITGISDLDSARWKSSQWRNLQVGWDESTAGERPSRVSIWEIEPVVTPFYICPPPFFRPKFPRQPGMPDDESDIENAFKRAMPWLGDDFGMKDASGSIFPGLSLVQWMSMQQNNQFSAAQSGCFPPMLSPNTLHSNLGTDDPSKLLSFQAPALSAPSLQFNKPNLPNQINQLHQSPVSWPQQQQQQQQQQQQQQQQLQLQHQQQQQQLQQQQQQQQQQQLQQQQQQQLQQQQSQQQQLQSLLQIPMNQLQQPRQQQLPEPKNLPLPQQQLPQQLGQQSQKAIMSNGVVASNQITNQLVLQQQQLLSGGISPQQSIHSASKTTFPLTSLPQESQFLQQIDQQASLLQRQQLPQQTQLQQSSLHLLQQNQPQRAPQQPPVATMSQQTPSEQQLHLQLLQKLQQHQQHQQLLSTSSPLLQPQLLQQQSTPQQNQQLTQLPASQHQTQQLGNNAFSTEKVLNSNSFSSSLMQPHQLPVNHPQNTQKSLAITRAPSTLTDGDAPSCSTSPSTNNCQISPSNLLKRNQQVPATLGGSLVVESTSNLIQELQSKSDMQIKNEFSNVKGFDQLKYKGTITDQMEASSSGTSYCLDPGNVQQSLPLSNFCMEGDVQSHSRSNLPFDSNLDGLTPDPVLMRGYDSQKDLQNMLSNYGGAPRDIETELSTADISSQSFGVPNMTFNPGCSGDVGINDTGVLNNGLRANQTQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRNDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSYTEVQQMSLDGDLGNVPIPNQACSGTDSGNAWRGPYDDNSAASFNR* 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1489 1142 MobiDBLite consensus disorder prediction 561 588 - -
Lja4g1489 1142 Gene3D - 289 360 - -
Lja4g1489 1142 SUPERFAMILY CAD & PB1 domains 1028 1094 - -
Lja4g1489 1142 CDD B3_DNA 125 217 IPR003340 GO:0003677
Lja4g1489 1142 PANTHER AUXIN RESPONSE FACTOR 19 1 1130 - -
Lja4g1489 1142 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Lja4g1489 1142 Pfam AUX/IAA family 1010 1100 IPR033389 -
Lja4g1489 1142 Gene3D - 124 227 IPR015300 -
Lja4g1489 1142 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1130 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lja4g1489 1142 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Lja4g1489 1142 Gene3D - 1010 1104 - -
Lja4g1489 1142 MobiDBLite consensus disorder prediction 733 756 - -
Lja4g1489 1142 MobiDBLite consensus disorder prediction 803 827 - -
Lja4g1489 1142 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Lja4g1489 1142 SMART B3_2 126 228 IPR003340 GO:0003677
Lja4g1489 1142 MobiDBLite consensus disorder prediction 469 496 - -
Lja4g1489 1142 ProSiteProfiles PB1 domain profile. 1015 1108 IPR000270 GO:0005515
Lja4g1489 1142 Coils Coil 497 553 - -
Lja4g1489 1142 MobiDBLite consensus disorder prediction 677 702 - -
Lja4g1489 1142 MobiDBLite consensus disorder prediction 1122 1142 - -
Lja4g1489 1142 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1489 Lja-Chr4 13780352 13787772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1489 1 490 B3 DNA Binding Superfamily AT5G20730 80.561 0.0 801
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lja4g1489 AUX_IAA 9.4e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1489 K14486 - gmx:100805456 922.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1489 4 13780352 13787772 Lja4g1489 4 13780352 13787772 ECH
Lja4g1489 4 13780352 13787772 Lja6g1976 6 47713877 47719412 PCT