Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1483 ATGAGTCTGAAAAGAAAAAGAGGCGTAGTTCCCTCTTCCAACGTCGATATCATCGACCTCTGTGACACCGACGACGACGACGACGGCGTTAAGGTCCTCAACTTCATACCTCCAATAAACCCTTCCACCAAACGAAGAAAACTACAAAGAGGAGAGAGTTCAAACGATGCGCCGTTCGTCTGCGAAATATGCACGGACACCAAAACGACCAAGGACTCCTTCAGCATCACCGGTTGCTCCCACGCGTACTGCTCCGACTGCGTTGCCACGTACGTCGCAACCATGGTTGAGAAAAACGTGATCTACTTCGGGTGCCCCGTTCCGGGATGCTCAGGACGACTGACGCCGGAGAATTGCTGCGTGATTCTCCCGGCGGAGATGCTGGACCGGTGGCTGAGGGCGTTGTACGAGGCGACGATCAAGCAATCGCACAAGCTCTACTGCCCCTTCGCCGACTGCTCCGCTCTGTTGGTGAACGATAGGTGGAAGAAGGTTAGGAAGTCGGAGTGCCCCTATTGCAGGAGGTTGTTCTGTGCGCAGTGTAAGGTGCCATGGCACGGGAGTATCAATTGCAATAAGTTTCAGATGCTGAATAAGGATGAGCTGGTGAACCTTGCTGAGGATAACAAGTGGAAGAAGTGCCCTCATTGCAACATCTATGTTGAAAAAATAGGCGGCTGCCAATACATGCAATGCAGGTGTGGAGGTCACTTCTGTTACAGATGTGGAGCTGGGTCAAAAAAGTCCCATCAGTGCTACAAGTGTAAGACATAA 774 0.5168 MSLKRKRGVVPSSNVDIIDLCDTDDDDDGVKVLNFIPPINPSTKRRKLQRGESSNDAPFVCEICTDTKTTKDSFSITGCSHAYCSDCVATYVATMVEKNVIYFGCPVPGCSGRLTPENCCVILPAEMLDRWLRALYEATIKQSHKLYCPFADCSALLVNDRWKKVRKSECPYCRRLFCAQCKVPWHGSINCNKFQMLNKDELVNLAEDNKWKKCPHCNIYVEKIGGCQYMQCRCGGHFCYRCGAGSKKSHQCYKCKT* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1483 257 ProSiteProfiles Zinc finger RING-type profile. 61 107 IPR001841 -
Lja4g1483 257 ProSitePatterns Zinc finger RING-type signature. 79 88 IPR017907 -
Lja4g1483 257 Pfam Zinc finger, C3HC4 type (RING finger) 61 106 IPR018957 GO:0046872
Lja4g1483 257 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 21 256 - -
Lja4g1483 257 SUPERFAMILY RING/U-box 136 195 - -
Lja4g1483 257 Gene3D - 195 257 - -
Lja4g1483 257 SUPERFAMILY RING/U-box 197 256 - -
Lja4g1483 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 144 IPR013083 -
Lja4g1483 257 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 21 256 IPR031127 GO:0004842|GO:0016567
Lja4g1483 257 Pfam IBR domain, a half RING-finger domain 130 191 IPR002867 -
Lja4g1483 257 Pfam IBR domain, a half RING-finger domain 205 252 IPR002867 -
Lja4g1483 257 SUPERFAMILY RING/U-box 56 140 - -
Lja4g1483 257 ProSiteProfiles TRIAD supradomain profile. 57 257 IPR044066 -
Lja4g1483 257 SMART ibrneu5 129 191 IPR002867 -
Lja4g1483 257 SMART ibrneu5 195 255 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1483 Lja-Chr4 13685237 13686771 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1483 61 244 C3H Transcription Factor Family AT2G19610 32.673 3.60e-23 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1483 K11975 - rcu:8259039 278.1