Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1477 ATGGAGGATGCTGGAGAGTCCAAGATGGAGGATGCTGGAGGGTCTAAATTGATTGGAATGAGACAGATTGCAAGATTAAAGGAAATATTTCAGAAGTGGCAGCATGTGGCAAAAGATTCTGATGAACATGCAGATGTGAATCTTGGAGGCATATCACCAATGATTAACAAGAGGTTAACCACTGTTGTGTACTGTGATTCTGATGATGATAGCTGCCCAAGCCCTCAAGGACCACATGATGTTCCCAAAGGGTACTTAGCCGTCTATGTCGGTCCGGAGCTTCGGAGGTTCATCATTCCCACCAGCTACCTTACCCACCCTCTCTTCAAAATGTTGCTGGAAAAGGCTGCTGAGGAATTTGGGTTTGACCACAGTGGTGCACTCACCATTCCATGTGAAATTGAGACTTTTAAGTACCTCCTCAACTGCATGGAGAACACCCATCAGCAACATGATGACAGCCCCTCTGACAACACAGGAACAATTGAAGAGTAA 495 0.4566 MEDAGESKMEDAGGSKLIGMRQIARLKEIFQKWQHVAKDSDEHADVNLGGISPMINKRLTTVVYCDSDDDSCPSPQGPHDVPKGYLAVYVGPELRRFIIPTSYLTHPLFKMLLEKAAEEFGFDHSGALTIPCEIETFKYLLNCMENTHQQHDDSPSDNTGTIEE* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1477 164 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 15 163 IPR003676 GO:0009733
Lja4g1477 164 Pfam Auxin responsive protein 72 143 IPR003676 GO:0009733
Lja4g1477 164 PANTHER SMALL AUXIN-UP RNA-RELATED 15 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1477 Lja-Chr4 13626624 13629162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1477 9 160 Calmodulin-binding Proteins AT5G20810 62.658 2.33e-64 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1477 K14488 - gmx:100795275 234.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1477 4 13626624 13629162 Lja4g1477 4 13626624 13629162 ECH
Lja4g1477 4 13626624 13629162 Lja6g1967 6 47562665 47565547 PCT