Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1476 ATGGCCAGAGGAGGCAAACTAACGAAGCTGAAGTCCGCCCTAAAAAAGTGGAACTCATTCAGCAGCAACGGAAGCGCCACCAAGCACAGCAGCAGCGCCGTCGCCGACGACGAGTCCTCCTCCTCCTCCCTCCAAACCGTCTACGTCGGCAAATCCCGCCGCCTCTACCGCGTCTCCTCCGACGTCGTCGACCACCCTGTCTTCCGTGAACTCGTCGAACGGTCACGTGAATCACAGCAAAACGACTCCGACTCCGACGCCGCCGTCAACGTCGCCTGCGAAGTCGTCCTCTTCGAACACCTGCTCTGGATGCTCGAGAATGCTGACCCTCAACCTGACTCGCTCGATGAACTCGCCGATTTCTACGCTTGCTAG 375 0.592 MARGGKLTKLKSALKKWNSFSSNGSATKHSSSAVADDESSSSSLQTVYVGKSRRLYRVSSDVVDHPVFRELVERSRESQQNDSDSDAAVNVACEVVLFEHLLWMLENADPQPDSLDELADFYAC* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1476 124 MobiDBLite consensus disorder prediction 19 45 - -
Lja4g1476 124 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 4 124 IPR003676 GO:0009733
Lja4g1476 124 Pfam Auxin responsive protein 15 105 IPR003676 GO:0009733
Lja4g1476 124 PANTHER SMALL AUXIN-UP RNA-RELATED 4 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1476 Lja-Chr4 13599502 13600186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1476 6 107 Calmodulin-binding Proteins AT3G43120 24.812 1.88e-07 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1476 - - gmx:100808463 185.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1476 4 13599502 13600186 Lja4g1476 4 13599502 13600186 ECH