Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1458 ATGGTGTTTTGTAGTCACTGTTTGAAAAACGTTCCCGGAGATCGAACCCCCGATAAAAAACTATGTTGTAGACTATGTGGGAAGGTATTGGAGGAGTTTTATTATTCTGATGATCCTGGCTTTACAAAGGATTCATCTGGGCAGAGCAGAATATCAGGCCAGTGTGTAAGTTCAATCCAAAGTGAATTCTCCGCCTCGCGGCAAAGGACTTTAGACAATGCTCATGCATATATCAAAGCTATGAGTTGCAGCCTTGGAGTGGATGATGAAAATATGTTCAACCAAGCTTTAGCTTTCTATAGAATAGGACTTGAGAGAAATTTCACCAAGGGACGTCGATCGGAACTAGTACAGGCATCTTGCTTATATATCGCGTTCCGGCAAAATAATAAGCCATACCTTCTTATTGATTTTTCGAATTATTTAAGGACTAATGTGTATGTTCTAGGTGCAGTTTTCTTGCAGCTTTGTAAATTGTTGAGTCTTGAAGAGCACCCCATTGTTCAAAAGCCTGTGGATCCTAGTCTTTTTATTTTTAAATATACGACGAGTTTGTTGAACCATAGGAATGTTTGTGTCACTCAAACTGCACTCAATATTATTGCTAGCATGAAACGCGACTGGATGACGACGGGGAGGAAGCCGGGCGGGTTATGTGGTGCAGCGTTGTACGTGGCTGCTCTTGCTAATGGTTGGAAAAAATCTAAGTCGGAGATTCAAAGAATTGTCCATGTATGTGAAGCGACGTTGACTAAGCGGTTGGTGGAATTTGAAAATACAGAATCTGCTAGCTTGACAGTTGAGGAGTTGAATACGATGGCGAAGGAGCTTGAAAACAATCCTGCTCCTGTTAAAATACCAAATGGTGAAGGTGAAGGTTCAAAGGATCTACTATGTGAACACAAGGCTAGTGGTAAAGTGCCCTATTTTGCTCTTGGGTTATGTGAAACATGTTACAAGGATTTTGAGAAACTCTCTGGTGGACTTAGTGGTGGTTTGGATCCTCCTGCATTCCAGCGTTCTGCAAAATTACATTCTGAAGAAAGCGCCAAGAAATCCAATGAAGATTTGGTGAAAGCAACAAATGAAGCATCATGTGAGAGTCGACTAGACAAAAATTTGCATGCCTCTCAGCCTGAAAGTATTAATTGTGAGCATGATGAGTCACATAGGGAAGATGATATGAATGCGAAAACTGACGATGAAGAATCAGAAAGTCTTTCAGATATTGATGATCTGGAGGTTAATGGCTACCTTCACAGTGAGCAGGAAAAGCATTTTAAGAAAATTATTTGGGAAAAGATGAACAGAGAATATCTAGAGGAACAAGCAGTCAAGGAAGCAGCTGCAGCAGCTGCTAAGAAAGCTTTTGAGGCGAATTTCGAAAACTGTTCTGAGGATTTGCTTGCAGCGAGAGAGTTTGCTGAATCTACTGCTGCATCTGTGGCAAAATCGAGAAAGGAAATGAAAAAGAGACGAGCCGAAGAGGCAAAAAGCTTGGGTCCTCCTCAATCTGCTGCAGAGGCCACTAAGCAAATGTTGAGAACAAAGAGGCTCAGTAACAAAGTCAACTATGATCTCTTGCAATCATTATTTGATGAACCTGTTGCTCCAGAGAATCCCAAGAAAGTACGATTTGAGATACCCTCTGATGATCAAGATAATTTGAAGTCCAAGTTTGGGGACAAGATACAAGATGATGAACTGGGATCAGTGGACGAGTTTGAGGATGACGATATGCACGGAGATTATTATGGAAATGCCGACGAGGCATATGACTATGAGGATGATGGGTACAGCTTTGATTATTAG 1812 0.4134 MVFCSHCLKNVPGDRTPDKKLCCRLCGKVLEEFYYSDDPGFTKDSSGQSRISGQCVSSIQSEFSASRQRTLDNAHAYIKAMSCSLGVDDENMFNQALAFYRIGLERNFTKGRRSELVQASCLYIAFRQNNKPYLLIDFSNYLRTNVYVLGAVFLQLCKLLSLEEHPIVQKPVDPSLFIFKYTTSLLNHRNVCVTQTALNIIASMKRDWMTTGRKPGGLCGAALYVAALANGWKKSKSEIQRIVHVCEATLTKRLVEFENTESASLTVEELNTMAKELENNPAPVKIPNGEGEGSKDLLCEHKASGKVPYFALGLCETCYKDFEKLSGGLSGGLDPPAFQRSAKLHSEESAKKSNEDLVKATNEASCESRLDKNLHASQPESINCEHDESHREDDMNAKTDDEESESLSDIDDLEVNGYLHSEQEKHFKKIIWEKMNREYLEEQAVKEAAAAAAKKAFEANFENCSEDLLAAREFAESTAASVAKSRKEMKKRRAEEAKSLGPPQSAAEATKQMLRTKRLSNKVNYDLLQSLFDEPVAPENPKKVRFEIPSDDQDNLKSKFGDKIQDDELGSVDEFEDDDMHGDYYGNADEAYDYEDDGYSFDY* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1458 603 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Lja4g1458 603 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Lja4g1458 603 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Lja4g1458 603 SUPERFAMILY Cyclin-like 73 163 IPR036915 -
Lja4g1458 603 PANTHER TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT 1 536 IPR029529 GO:0000126|GO:0000995|GO:0006383
Lja4g1458 603 Pfam Transcription factor TFIIB repeat 172 259 IPR013150 GO:0017025
Lja4g1458 603 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Lja4g1458 603 SMART cyclin_7 176 279 IPR013763 -
Lja4g1458 603 SMART cyclin_7 76 158 IPR013763 -
Lja4g1458 603 MobiDBLite consensus disorder prediction 485 513 - -
Lja4g1458 603 MobiDBLite consensus disorder prediction 589 603 - -
Lja4g1458 603 CDD CYCLIN 173 248 IPR013763 -
Lja4g1458 603 SUPERFAMILY Cyclin-like 172 269 IPR036915 -
Lja4g1458 603 MobiDBLite consensus disorder prediction 369 408 - -
Lja4g1458 603 Gene3D - 173 266 - -
Lja4g1458 603 Coils Coil 260 280 - -
Lja4g1458 603 MobiDBLite consensus disorder prediction 543 568 - -
Lja4g1458 603 MobiDBLite consensus disorder prediction 344 358 - -
Lja4g1458 603 MobiDBLite consensus disorder prediction 340 359 - -
Lja4g1458 603 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 1 536 IPR000812 GO:0006352|GO:0070897
Lja4g1458 603 Gene3D - 64 165 - -
Lja4g1458 603 MobiDBLite consensus disorder prediction 543 603 - -
Lja4g1458 603 MobiDBLite consensus disorder prediction 381 403 - -
Lja4g1458 603 Gene3D Single helix bin 400 450 - -
Lja4g1458 603 CDD CYCLIN 74 143 IPR013763 -
Lja4g1458 603 Pfam Brf1-like TBP-binding domain 408 533 IPR011665 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1458 Lja-Chr4 13387821 13390074 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1458 1 517 Inorganic Solute Cotransporters AT2G01280 40.762 1.64e-103 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1458 K15196 - gmx:100817609 663.299