Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1454 ATGAGCTTCTACAATATTGAAGACTCTATCTCTGGTTTCACAATAGGGCAAGCTATATATGAAGCAGCTCTACTCATAGCAGTTCTGAGATGGGTTCTGTGCTTGGCTTTCAGAGTTATGAAATCTAGGACACAATCTCTTCACGCCCCACCTGAACCTTCTTCTTCTTCTTCATCATGGGAATCTTCCAGTTTCAACCCTCTACCTTTGACCACTTTTGGTGAGATCATGGAGAGGCTGCCAGAAACTGAGGACACATGTGCTGTGTGCTTGAACCAGCTGAAAATTGAAGATGAGGTTAGGGAGCTCATGAATTGCTACCATGTTTTCCACAAGGAATGCATAGATAGATGGTTGGAGCATGACCATGAGAGTGAAAACCACAACGCCACTTGCCCTCTCTGCAGAGCCCCTCTACTGAGTTCTTGTTGTCTTTCATCAGAGAGCTCAAGCTGTGTGCCTCCTCCTCAACCTAGCTGGGCTGTGGAGAGACTTCTCTATCTCTTTGGGGATGATCTGCTTCCATGTTAG 531 0.4595 MSFYNIEDSISGFTIGQAIYEAALLIAVLRWVLCLAFRVMKSRTQSLHAPPEPSSSSSSWESSSFNPLPLTTFGEIMERLPETEDTCAVCLNQLKIEDEVRELMNCYHVFHKECIDRWLEHDHESENHNATCPLCRAPLLSSCCLSSESSSCVPPPQPSWAVERLLYLFGDDLLPC* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1454 176 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 175 - -
Lja4g1454 176 MobiDBLite consensus disorder prediction 47 65 - -
Lja4g1454 176 SUPERFAMILY RING/U-box 80 141 - -
Lja4g1454 176 SMART ring_2 87 135 IPR001841 -
Lja4g1454 176 ProSiteProfiles Zinc finger RING-type profile. 87 136 IPR001841 -
Lja4g1454 176 PANTHER RING ZINC FINGER PROTEIN-RELATED 6 175 - -
Lja4g1454 176 Pfam Ring finger domain 85 136 IPR001841 -
Lja4g1454 176 MobiDBLite consensus disorder prediction 46 65 - -
Lja4g1454 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 141 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1454 Lja-Chr4 13324917 13326028 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1454 1 173 C3H Transcription Factor Family AT5G20885 46.774 4.14e-42 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1454 K16281 - gmx:100306203 218.394