Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1453 ATGTCAACAGAACCTCCTCCTTTTCAAGAAGCAGCGCGATGTGTTGTTTGCAGTTGCAGCTTCAACACCTTCAGGAGACGGCATCATTGTCGATCCTGTGGGAGAACATTGTGCAATGAACATTCATCTGATCAGATGGCTTTACCACAATTTGGCCTGTACTCAAATGTCCGAGTGTGTGCTGATTGTTTCAACAATTCACGATCTCAGGAGGTACCACATGCTTCTTCGGATGGAGTAAACAACATAACAGACACAATTTCTAAATTAGACATTGATGGCAATGTTGATTCAAAAACACTACCAAGTGCAGATAATAACCCTGTGTCAGGCATTAAAGAGTGTAAGTGTGGAATGCCTCTTTGCATTTGTGAAGCTCCTGCCCCTTCTTCTGATGCACTCCCTCAGCAGAAGAAAATCTCTCCAGCCATGACAGCTTCATCAAATCCTAAACCTAGGAAGACAGATACTGTTTCAAAAAATAGAAGCTCCAGCTCCACTAACAAGTTCAGTTCTCCATTTAACCTTGGTCATGTAACTAATGTTGCCTCAGCCAGACCCCAGACTGATTATGAAGTTAGTGGAGAGGGTCTACGAGAAGCAATAAAAAATGGTGACATTGCTGCTGTCAAGAAACTTCTTAATGAGGGTGTGGATGCAAATTACAGGGACAAGCAAGGACTGTCTTTATTGCATTTGGCTGCAGTGTTCAATCAAACTGATATAGTTTTCATCCTCATGGATTCAGGGGCAAGCCTGAAGTACAAAAATGCACAAGGAGAAACACCTTTAGATTGTGCTCCAGCTACACTGCAATACAAAATGCGAAAGAAGATGGAAGAAGGTGGAGTAATGGACAAAAACACTTGA 870 0.423 MSTEPPPFQEAARCVVCSCSFNTFRRRHHCRSCGRTLCNEHSSDQMALPQFGLYSNVRVCADCFNNSRSQEVPHASSDGVNNITDTISKLDIDGNVDSKTLPSADNNPVSGIKECKCGMPLCICEAPAPSSDALPQQKKISPAMTASSNPKPRKTDTVSKNRSSSSTNKFSSPFNLGHVTNVASARPQTDYEVSGEGLREAIKNGDIAAVKKLLNEGVDANYRDKQGLSLLHLAAVFNQTDIVFILMDSGASLKYKNAQGETPLDCAPATLQYKMRKKMEEGGVMDKNT* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1453 289 Pfam FYVE zinc finger 9 66 IPR000306 GO:0046872
Lja4g1453 289 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 8 68 IPR017455 -
Lja4g1453 289 Gene3D - 178 274 IPR036770 -
Lja4g1453 289 ProSiteProfiles Ankyrin repeat profile. 198 225 IPR002110 GO:0005515
Lja4g1453 289 MobiDBLite consensus disorder prediction 133 172 - -
Lja4g1453 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 73 IPR013083 -
Lja4g1453 289 SUPERFAMILY Ankyrin repeat 199 268 IPR036770 -
Lja4g1453 289 Pfam Ankyrin repeats (3 copies) 200 267 IPR002110 GO:0005515
Lja4g1453 289 ProSiteProfiles Ankyrin repeat region circular profile. 226 257 - -
Lja4g1453 289 ProSiteProfiles Ankyrin repeat profile. 226 258 IPR002110 GO:0005515
Lja4g1453 289 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 2 282 - -
Lja4g1453 289 MobiDBLite consensus disorder prediction 134 172 - -
Lja4g1453 289 CDD FYVE_scVPS27p_like 7 64 - -
Lja4g1453 289 SUPERFAMILY FYVE/PHD zinc finger 8 67 IPR011011 -
Lja4g1453 289 SMART ANK_2a 193 222 IPR002110 GO:0005515
Lja4g1453 289 SMART ANK_2a 226 255 IPR002110 GO:0005515
Lja4g1453 289 SMART fyve_4 2 69 IPR000306 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1453 204 264 MAP Kinase Kinase Kinase AT4G18950 40.984 1.07e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1453 - - gmx:100814367 484.952