Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1452 ATGGCTTGTGTGAACCACGAGGCAGAGATTTTTGCAGCTTCTCCTCAATCTCTTGCTGATAGTAATGGAAGGAATGACAGCATGGAGGTTCAGAACAACCTCAGTGATGAAGGGTCGGTGAAGCATTTCTCTAACAACAACAGGCCAATGCCAGCATCTGGGCTGAATGTAGTAACCCCTGGTAGGACTCAGTTCGCCATCTACTATAATGGGAGTATGCATGTCTATGATGGAATCCCTGCTGAAAAGGTGCATGAAATAATGTTGATTGCTGCTGCTGCCAAGTCTGCTGAAATGAAGAGTGGGATCCCCTTCATGTCACTCATTCCCACAAGCCCTTCTTCTCCACAAGGAACCTCTAACAGTTTGGCTTCTCCACCATCAGTCAGCTTTCCTGCAGAGAAGAGTTCCATTTGCAGGCTGCAAGAATTTCCAATAGCTCGCAGACAGTCACTTCAAAGGTTTCTTGAGAAGCGAAGAATGAGGTTGGGTAGCAAAAATCCTTATACCACCACCACAGGTAGAGGAGCTGATAACAAAGAGAACAACTTATGTGCTGAGATGACCCCAGTTAACGAACAAGGGTGGGATTTCAGCTCAGTATTGCTGCCTCTTAAGGGCAACTAG 627 0.4641 MACVNHEAEIFAASPQSLADSNGRNDSMEVQNNLSDEGSVKHFSNNNRPMPASGLNVVTPGRTQFAIYYNGSMHVYDGIPAEKVHEIMLIAAAAKSAEMKSGIPFMSLIPTSPSSPQGTSNSLASPPSVSFPAEKSSICRLQEFPIARRQSLQRFLEKRRMRLGSKNPYTTTTGRGADNKENNLCAEMTPVNEQGWDFSSVLLPLKGN* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1452 208 Pfam Jas motif 145 169 IPR018467 -
Lja4g1452 208 Pfam tify domain 60 92 IPR010399 -
Lja4g1452 208 ProSiteProfiles Tify domain profile. 58 93 IPR010399 -
Lja4g1452 208 PANTHER DIVERGENT CCT MOTIF PROTEIN 1 185 - -
Lja4g1452 208 MobiDBLite consensus disorder prediction 110 129 - -
Lja4g1452 208 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 1 185 IPR040390 -
Lja4g1452 208 SMART tify_2 58 93 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1452 Lja-Chr4 13312575 13315833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1452 64 184 Tify Gene Family AT5G20900 44.715 3.53e-24 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lja4g1452 tify 8.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1452 K13464 - gmx:100306045 169.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1452 4 13312575 13315833 Lja6g1942 6 47162692 47165171 PCT