Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1446 ATGAGAGCCTTAGAACAATTTGATGCTTCTCAAACCCAGTCATCATCTTCTTCATCTTCTTCCATTGATAGCAACAACCACCCTTCTGTGACACCACCACCACCACCCTCTCCCTCTTCATCTCTCTGCCTCTCTAGTGTCTGCAGAAGAAACAGAACAGATTTGAGCACTGACTTGAAACTTGGTCTCAGTATCTCTCATTCTTCTCAATCAGAGTCAGCATTCAATTCAACACCACCAAGGGAGGAAACATTTGACTGGCCACCAATTAAGTCCACATTGAGGAGCACCCTGGTTGAGAAACAAAACCATCGGAGCCAGACACCTTCTTTGTTTGTCAAAGTCTACATGGAAGGAATCCCCATTGGTAGAAAACTAAACCTGTTGGAACATCATAGCTATGATGGGCTTGTAAAATCCCTTGGCCACATGTTTAGGACCATCATTCTCTGTCCTAACTCTCAACCAAACAACTCTGGGAATTTTCATGTGCTGACTTATGAGGATCAAGAAGGGGATTGGATGATGGTTGGAGATGTGCCTTGGGAGATGTTCTTGACCAGTGTGAAGAGGCTGAAGATCACAAGAGCTGATAGATGCTAA 603 0.4428 MRALEQFDASQTQSSSSSSSSIDSNNHPSVTPPPPPSPSSSLCLSSVCRRNRTDLSTDLKLGLSISHSSQSESAFNSTPPREETFDWPPIKSTLRSTLVEKQNHRSQTPSLFVKVYMEGIPIGRKLNLLEHHSYDGLVKSLGHMFRTIILCPNSQPNNSGNFHVLTYEDQEGDWMMVGDVPWEMFLTSVKRLKITRADRC* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1446 200 Pfam AUX/IAA family 45 196 IPR033389 -
Lja4g1446 200 SUPERFAMILY CAD & PB1 domains 104 194 - -
Lja4g1446 200 Gene3D - 104 200 - -
Lja4g1446 200 ProSiteProfiles PB1 domain profile. 110 199 IPR000270 GO:0005515
Lja4g1446 200 MobiDBLite consensus disorder prediction 1 27 - -
Lja4g1446 200 PANTHER AUXIN-RESPONSIVE PROTEIN IAA31 16 200 - -
Lja4g1446 200 MobiDBLite consensus disorder prediction 1 44 - -
Lja4g1446 200 MobiDBLite consensus disorder prediction 68 88 - -
Lja4g1446 200 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 200 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1446 Lja-Chr4 13254880 13256704 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1446 89 200 B3 DNA Binding Superfamily AT3G61830 32.456 1.70e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lja4g1446 AUX_IAA 8.5e-34 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1446 K14484 - gmx:100818083 282.722
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1446 4 13254880 13256704 Lja4g1446 4 13254880 13256704 ECH