Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1437 ATGGAAACAGAGGATTGGGACTTGAGCGCTGAAGACCTTGATTCCCTCGAACGTGACGCTTTCCAGAAGATTGCTCAACTGCGCCACGCTCCTTCTTCTTCCCAACAACCGCATTCTGCAACTCACCACTCGGAGCGACACCCACCAAACCCTCTTCCCGATTCACGTCCTCAAAGGGTTGATGCTTTGTCTCAACAAGGAGCTAGAGTACTTCCCACGTCAGTGAATTTGAAAGCAGGAACAGCAAACAATGATGAACACGCAAAAGAACGGTCGAAGATTATGGTCAAATTTTTCCTTCATTCTAGTGGAAGCATCGCCGCAAGGTTTCAATATGACCAGGTAGTAGTTGCTGCTTTCCGGAGAATACCTAAATCTTTTTGGAATGCAAAGGAGCGGTTATGGATGTTTCCACTATCTTCTTTATCAGAAGCAGAAAGGGTTCTTGGAGAATTATCTGGTCATAATGTTCAGGTGGAAAACTTAGATCCCTTAGTGCAGCGGGCCATTACTGCTGCATCTGCTGTTCCAGATCTTCAAGGTCGATACGACAAGATCCCTAGCGATGTTGAATCAAAGCTTTTGCCATTTCAGCGAGAAGGTGTTAGGTTTATATTGCAGCATGGAGGTCGTGCTCTTTTAGCTGATGAAATGGGACTTGGGAAAACTTTGCAGGCCATTGCTGTAGCTGCATGCGTTCAGGACTCGTGGCCGGTTCTTATAATTGCACCTTCTTCATTACGCTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATAGTTATTGTCTTATCTCAAAATGGTGGATCAAATAGAGGAGGATTCAACATAGTATCTTCTAGTGCCAAAGGAAGCATTCATCTGGATGGGCTATTCAATATTATCTCATATGATTTGGTGCCAAAGCTACAGAATATGCTTATCGCATCCGACTTTAAGGTTGTCATTGCAGATGAATCACACTTTCTGAAAAATGCTCAGGCGAAGAGGACTACTGCTTCTCTGCCAGTTTTAAAGAATGCTCAATATGCAATATTGCTTAGTGGAACTCCTGCTTTATCCCGACCGATTGAACTATACAAGCAGCTGGAAGCTTTGTATCCTGATGTATATAGGAATGTTCATGACTATGGTAACCGGTATTGCAAGGGTGGAATTTTTGGAATTTATCAAGGTGCAAGTAACCATGAAGAATTGCACAATTTGATGAAAGCAACAGTGATGATTCGCAGGCTTAAAAAGGATGTTCTTACTGAACTTCCTGTAAAGCGTAGGCAACAAGTCTTCCTAGACTTGGCTGACAAGGACATGAAGCAAATTAATGCTTTATTTCGTGAGTTGGAGATGGTTAAAGCCAAAATTAAGGCATCAAACTCAAAAGAGGAGGTTGAATCACTGAAGTTTACTCAAAAGCACCTTATTAACAAGATATATACTGAGTCTGCAGAAGCCAAGATTCCATCGGTTCTGGATTATGTGGGAACTGTCATTGAGGCAGGTTGCAAGTTTCTTATCTTTGCACATCATCAACCAATGGTTGAGGCCATACATGAGTTTCTTCTTAAGAAAAAAGTGGGCTGCATCCGGATTGATGGAGGTACACCAGCTGCATCAAGGCAACACTTGGTTACAGAGTTTCAGGAAAAAGATGCTATCAAGGCAGCAGTGCTATCTATTAAAGCTGGAGGCTTTGGGTTGACTTTAACTGCTGCCAGCACAGTCATTTTTGCAGAATTATCTTGGACTCCAGGTGACCTAATTCAGGCAGAAGACCGTGCTCATAGAATCGGCCAGGTATCTTCAGTAAATATATACTACTTGCTAGCAAATGACACAGTTGATGACATCATATGGGACGTAGTGCAAAGCAAACTGGAAAATTTGGGGCAGATGTTAGATGGCCATGAGAACACCTTAGAGGTCTCAGCTGGCCAGCCAGTGAGTAGCCCTGCAAAACAGAAAACTCTTGATCAGTTTGTTAGAAGATGTGGCAACATGGAACATCAGTCCAGCCCGAAACGTGCCCGACAATGA 2052 0.4303 METEDWDLSAEDLDSLERDAFQKIAQLRHAPSSSQQPHSATHHSERHPPNPLPDSRPQRVDALSQQGARVLPTSVNLKAGTANNDEHAKERSKIMVKFFLHSSGSIAARFQYDQVVVAAFRRIPKSFWNAKERLWMFPLSSLSEAERVLGELSGHNVQVENLDPLVQRAITAASAVPDLQGRYDKIPSDVESKLLPFQREGVRFILQHGGRALLADEMGLGKTLQAIAVAACVQDSWPVLIIAPSSLRLQWASMIQQWLNIPSSDIVIVLSQNGGSNRGGFNIVSSSAKGSIHLDGLFNIISYDLVPKLQNMLIASDFKVVIADESHFLKNAQAKRTTASLPVLKNAQYAILLSGTPALSRPIELYKQLEALYPDVYRNVHDYGNRYCKGGIFGIYQGASNHEELHNLMKATVMIRRLKKDVLTELPVKRRQQVFLDLADKDMKQINALFRELEMVKAKIKASNSKEEVESLKFTQKHLINKIYTESAEAKIPSVLDYVGTVIEAGCKFLIFAHHQPMVEAIHEFLLKKKVGCIRIDGGTPAASRQHLVTEFQEKDAIKAAVLSIKAGGFGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHENTLEVSAGQPVSSPAKQKTLDQFVRRCGNMEHQSSPKRARQ* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1437 683 MobiDBLite consensus disorder prediction 22 64 - -
Lja4g1437 683 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 417 IPR027417 -
Lja4g1437 683 Pfam Helicase conserved C-terminal domain 504 603 IPR001650 -
Lja4g1437 683 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 494 646 IPR001650 -
Lja4g1437 683 Pfam SNF2-related domain 212 468 IPR000330 GO:0005524|GO:0140658
Lja4g1437 683 SMART helicmild6 520 603 IPR001650 -
Lja4g1437 683 SMART ultradead3 190 383 IPR014001 -
Lja4g1437 683 Gene3D - 167 442 IPR038718 -
Lja4g1437 683 Gene3D - 457 679 IPR027417 -
Lja4g1437 683 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 2 674 IPR030101 GO:0006281|GO:0031297|GO:0036310
Lja4g1437 683 ProSiteProfiles HARP domain profile. 90 164 IPR010003 -
Lja4g1437 683 CDD SF2_C_SNF 490 614 - -
Lja4g1437 683 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 203 375 IPR014001 -
Lja4g1437 683 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 2 674 - -
Lja4g1437 683 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 316 646 IPR027417 -
Lja4g1437 683 CDD DEXHc_HARP_SMARCAL1 194 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1437 Lja-Chr4 13176897 13185497 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1437 384 630 RAD5 or RAD16-like Gene Family AT1G61140 24.706 1.75e-16 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja4g1437 SNF2_N 1.7e-28 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1437 K14440 - gmx:100797654 1134.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1437 4 13176897 13185497 Lja4g1437 4 13176897 13185497 ECH
Lja4g1437 4 13176897 13185497 Lja4g3617 4 67714706 67715797 PCT