Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1430 ATGGCAGGGGATGGCAGTTTGAATAGAGAAACTGTGAGTCTTCAACCAGCTGTTGATCCTGATAGCAAGCAATCTTCAAAGAAGAGTGACACCAAAGATGAAATCACCAACACAGTGCCCTTGTACAAGCTCTTCTCATTTGCTGATCCTTTTGATCAATTATTGATGTTTCTGGGTACTTTTGGTGCTATTGGGAATGGAATCTCCATGCCCGTAATGACTTTGATATTTGGAAATATGATCAATGCATTTGGAAGCACCACAAACTCCAAAGAAGTTGTTGATGAAGTTTCCAAGGTGTCTCTGAAATTTGTATACTTAGGAGCCGGCACCTTCATTGCATCACTTTTGCAATCGACTTGCTGGATGATCAGTGGGGAGAGACAAGCTGCAAGAATTAGAGGCTTATACCTTCAAAATATTCTGAGACAAGATGTGAGCTTCTTTGATACAGAAACTAATACCGGAGAGGTTGTTGGAAGGATGTCAGGCGATACTGCTCTTATTCAAGAAGCCATGGGTGAGAAGGTTGGACAGTTCTTATCGCTAGTGGCAACTTTCATTGCGGGTTTTGTTGTAGCATTCACTAAGGGATGGCTTCTAACTCTTGTCATGCTATCAATTATTCCACTTATTGCCTTGTCAGGTGCTACAATGAGCAAGGTTATTTCAAAAGCATCATCCATTGGACAAGCAGCTTATTCTACAGCAGCAAATGTTGTAGAGCAGACATTAGGTTCTATACGAACTGTGGCATCATTCACTGGTGAGAAGCAAGCTATAGCTAAATATAATCAATTCTTAACTAAAGCTTACAAGAGTTTAGTTCAAGAGGCACTAGCTTCTGGTGTGGGGTTTGGTGCAAACTATTTTGTGGGTATCTCCAGTTATGGATTGTCTGTATGGTTTGGTGGGAAGATGATAATAGAGAAAGGATATAACGGAGGAGAAGTCGTGACTGTAATTTTTTCTGTATTGATTGGATCCTCGTCTCTAGGGCAGGCATCTCCAATATTGAGTGCTTTTGCTGCTGGACAAGCTGCAGCCTTTAAGATGTTTGAAACAATTAAAAGAAAGCCTGAAATTGATGCTTATGATGCTAACGGGAGGAAGCTTGATGACATTCATGGAGATATAGAACTCAGGGAGGTTTGTTTTAGTTATCCTACAAGACCAGATGAACTGATATTCAATGGATTTTCACTTTCGATACCAAGTGGTACTACTGCAGCTTTGGTAGGGCAAAGTGGGAGTGGGAAATCCACAGTAGTTAGTTTGATAGAGAGATTCTATGATCCACAGACCGGTGAAGTTCTTATAGATGGTGTCAATCTTAGAGAATTTCAACTGAAATGGATCAGACAGAAAATAGGCCTAGTCAGCCAGGAACCAGTTCTCTTTACTTGTAGCATTAAGGAAAATATTGCCTATGGAAAGGATGGTGCCACTGATGAAGAAATCAGAGCAGCAGCAGAACTTGCTAATGCTGCCAAATTCATTGATAAACTTCCTCAGGGACTAGATACAATGGTTGGTGAACATGGAACTCAGCTATCTGGGGGTCAAAAGCAGAGAGTTGCAATAGCTAGAGCAATTCTGAAAGACCCAAGAATCCTACTTCTGGATGAAGCTACAAGTGCTCTTGATGCTGAATCGGAGAGAATTGTACAAGAAGCTTTGGACAGAATAATGATAAACCGAACAACTGTCATTGTAGCCCATCGTTTAAGCACTATAAGAAATGCTGATACCATTGCTGTTATTCATCAAGGAAAAATTGTTGAAAGAGGTTCACATGCTGATCTCACCAAGGATCCTGATGGAGCCTACAGCCAGCTTATTAGACTGCAACAAATGAAGGGATCAGAACAGAATGTTGCAAATGATGCAGATAAGCCAAAAAGTATAGTGCTTGGTGGAAAACAATCAAGTCAAAGATCTTCTTCCTCAGCATCTATAAGCCAAAGATCATCTGGAGTTGGAAACAGTGGTCGTCACTCGTTCTCAGAACCTACAAGTGGAGGACCTAAAGCTCCTCCTTCAACAGTGTCTTCACCAAAAGTGCCTCTTTATCGCCTCGCTTATTTAAACAAGCCTGAAATTCCAGTCTTACTGCTAGGGACTATAACTGCAGTGGTGAATGGAGCATTATTACCTATTTTTGGTCTCTTACTTTCCAAAATGATAAGTATTTTCTATGAGCCAGCTGATGAACTTCGAAAAGATTCAAAAGTGTGGGCACTGGTGTTTGTTGCACTTGGTTTGGTGTCCTTCCTCATTATTCCATGTAGGTCCTACTTTTTTGGTGTTGCTGGCGGTAAGTTGATCAAAAGGGTCAGAAAAATGTGCTTTGAGAAAATAGTTCACATGGAAATAAGCTGGTTTGATGAAGCTGACCATTCAAGTGGAGCACTAGGAGCAAGGCTCTCTACTGATGCAGCTTCTGTTCGAGGTTTGGTTGGGGATGCACTTGGTTTGCTGGTTCAACACATTGCTACTGCAATAACTGGCTTGGTAATTGCTTTTGTAGCCTGCTGGCAACTTGCTCTTATAATCCTCGCTTTGGTGCCTCTGTTAGGATTAAATGGATATTTGCAACTGAAGTTCTTGCAAGGGTTCAGTGCAGATGCAAAGAAATTGTATGAAGATGCGAGTCAAGTGGCAAATGATGCTGTTGGGAGTATAAGAACTGTTGCTTCTTTCTGTGCTGAAGAGAAGGTGATGAAATTATACCAGGAAAGATGTGAGGGACCAATTAAGACTGGCATAAGGCGAGGGATAATAAGTGGAATTAGTTTTGGGTTATCATTTTTGGTGTTGTATGCAGTTTATGCATGCAGTTTTTATGCTGGAGCTCGTCTTGTAGAGGATGGAAAATCAACATTCTCAGATGTTTTCCGAGTCTTTTTTGCTCTCAGCATGTCAGCTTTGGGAGTCTCTCAATATAGCTCCTTGGCTCCAGATTCTAATAATACAAAAGGTGCTGCTGCTTCAATATTTTCTATTCTTGATAGAAAGTCACAAATAGATGCTAGTGATGAATCTGGCATGACATTGGAAGAAGTCAATGGAGAAATTGTTTTAAACCATGTTAGTTTCAAGTATCCTACCAGACCTGATGTTCAAATATTCAAAGATCTTTGCTTGACCATTCACAGTGGCAAGACTGTTGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCTCACTACTACAAAGATTTTATGACCCGGACTCGGGAAACATTACACTGGATGGAAAAGAAATCCAAAGACTGCAAGTGAAATGGCTAAGACAGCAGATGGGCCTGGTAAGCCAAGAGCCAGTACTGTTTAATGAAACTATTAGAGCTAACATTGCATATGGAAAAGGAGGAGATGCAACAGAAGCAGAAATCATAGCTGCAGCAGAACTAGCAAATGCCCACAATTTCATTAGTGGTTTGCAGAAGGGTTATGACACGATAGTCGGGGAGCGAGGAGTTCAATTATCTGGGGGACAGAAGCAGCGGGTGGCAATTGCGCGAGCTATTGTGAAGAATCCAAAGATATTATTACTAGATGAAGCCACCAGTGCACTTGATGCCGAGTCTGAAAAAGTGGTTCAGGATGCACTTGACCGTGTTATGGTAGACCGAACCACAATAGTAGTGGCTCATAGGTTATCTACTATTAAGGGTGCAGATTTAATTGCAGTGGTTAAGAATGGTGTTATAGCAGAGAAGGGAAAGCATGAAGCATTACTCCATCAGGGAGGTCAATATGCTTCCTTAGTAGCATTGCACACAAGTGCTTCTTCATCTTAG 3813 0.4128 MAGDGSLNRETVSLQPAVDPDSKQSSKKSDTKDEITNTVPLYKLFSFADPFDQLLMFLGTFGAIGNGISMPVMTLIFGNMINAFGSTTNSKEVVDEVSKVSLKFVYLGAGTFIASLLQSTCWMISGERQAARIRGLYLQNILRQDVSFFDTETNTGEVVGRMSGDTALIQEAMGEKVGQFLSLVATFIAGFVVAFTKGWLLTLVMLSIIPLIALSGATMSKVISKASSIGQAAYSTAANVVEQTLGSIRTVASFTGEKQAIAKYNQFLTKAYKSLVQEALASGVGFGANYFVGISSYGLSVWFGGKMIIEKGYNGGEVVTVIFSVLIGSSSLGQASPILSAFAAGQAAAFKMFETIKRKPEIDAYDANGRKLDDIHGDIELREVCFSYPTRPDELIFNGFSLSIPSGTTAALVGQSGSGKSTVVSLIERFYDPQTGEVLIDGVNLREFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMINRTTVIVAHRLSTIRNADTIAVIHQGKIVERGSHADLTKDPDGAYSQLIRLQQMKGSEQNVANDADKPKSIVLGGKQSSQRSSSSASISQRSSGVGNSGRHSFSEPTSGGPKAPPSTVSSPKVPLYRLAYLNKPEIPVLLLGTITAVVNGALLPIFGLLLSKMISIFYEPADELRKDSKVWALVFVALGLVSFLIIPCRSYFFGVAGGKLIKRVRKMCFEKIVHMEISWFDEADHSSGALGARLSTDAASVRGLVGDALGLLVQHIATAITGLVIAFVACWQLALIILALVPLLGLNGYLQLKFLQGFSADAKKLYEDASQVANDAVGSIRTVASFCAEEKVMKLYQERCEGPIKTGIRRGIISGISFGLSFLVLYAVYACSFYAGARLVEDGKSTFSDVFRVFFALSMSALGVSQYSSLAPDSNNTKGAAASIFSILDRKSQIDASDESGMTLEEVNGEIVLNHVSFKYPTRPDVQIFKDLCLTIHSGKTVALVGESGSGKSTVISLLQRFYDPDSGNITLDGKEIQRLQVKWLRQQMGLVSQEPVLFNETIRANIAYGKGGDATEAEIIAAAELANAHNFISGLQKGYDTIVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVDRTTIVVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLHQGGQYASLVALHTSASSS* 1271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1430 1270 SUPERFAMILY ABC transporter transmembrane region 43 363 IPR036640 GO:0005524|GO:0016021
Lja4g1430 1270 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 27 1266 - -
Lja4g1430 1270 CDD ABC_6TM_Pgp_ABCB1_D2_like 694 1009 - -
Lja4g1430 1270 SMART AAA_5 1053 1246 IPR003593 -
Lja4g1430 1270 SMART AAA_5 406 592 IPR003593 -
Lja4g1430 1270 Gene3D - 1016 1269 IPR027417 -
Lja4g1430 1270 MobiDBLite consensus disorder prediction 8 22 - -
Lja4g1430 1270 CDD ABC_MTABC3_MDL1_MDL2 1026 1261 - -
Lja4g1430 1270 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 379 615 IPR003439 GO:0005524
Lja4g1430 1270 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 705 991 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja4g1430 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1015 1263 IPR027417 -
Lja4g1430 1270 CDD ABC_MTABC3_MDL1_MDL2 379 617 - -
Lja4g1430 1270 MobiDBLite consensus disorder prediction 1 32 - -
Lja4g1430 1270 PANTHER - 27 1266 - -
Lja4g1430 1270 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1026 1263 IPR003439 GO:0005524
Lja4g1430 1270 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 57 344 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja4g1430 1270 Pfam ABC transporter transmembrane region 704 975 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja4g1430 1270 Pfam ABC transporter transmembrane region 56 329 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja4g1430 1270 Pfam ABC transporter 398 546 IPR003439 GO:0005524
Lja4g1430 1270 MobiDBLite consensus disorder prediction 638 680 - -
Lja4g1430 1270 ProSitePatterns ABC transporters family signature. 518 532 IPR017871 GO:0005524
Lja4g1430 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 617 IPR027417 -
Lja4g1430 1270 Pfam ABC transporter 1045 1194 IPR003439 GO:0005524
Lja4g1430 1270 ProSitePatterns ABC transporters family signature. 1166 1180 IPR017871 GO:0005524
Lja4g1430 1270 Gene3D ABC transporter type 1, transmembrane domain 102 1000 IPR036640 GO:0005524|GO:0016021
Lja4g1430 1270 MobiDBLite consensus disorder prediction 621 684 - -
Lja4g1430 1270 Gene3D - 377 630 IPR027417 -
Lja4g1430 1270 CDD ABC_6TM_Pgp_ABCB1_D1_like 56 340 - -
Lja4g1430 1270 SUPERFAMILY ABC transporter transmembrane region 692 1006 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1430 Lja-Chr4 12955575 12961960 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1430 57 623 Calmodulin-binding Proteins AT2G36910 36.491 8.03e-112 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1430 K05658 - gmx:100800293 1963.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1430 4 12955575 12961960 Lja4g1430 4 12955575 12961960 ECH