Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1429 ATGGTGGGGGATAACAGTTTGGATGGGGATATTGCGAGTCTTCAACTAGATGTAGATCATGATAACAAGCAAGATTCAGAGACTAGCAAGGCCAAAGATGAAACTATCAACTCTGTACCCTTACACAAGCTTTTCTCATTTGCGGATTCTTTGGATCATTTATTGATGTTTGTGGGGACTGTGGGTGCTATTGGCAGTGGAGTCACCATGCCCTTGATGATTTTTATACTTGGAGACATGATCGATGCATTTGGAGGATCTAAAAACACCAAAGAACTCGTTGATGATGTTTCCAAGGTATCTCTGAAATTTGTATACTTGGCTGTTGGTGCATTTATTGAAGGACTTTTGCAATTGTCTTGCTGGATGATTACTGGTGAGAGACAGGCTGCAAGAATTAGAGGCTTGTACCTTCAAAATATTCTGAGGCAAGATGTGAGCTTCTTTGATAAGGAAACTAATACTGGAGAGGTTGTTGGAAGGATGTCCGGTGATACAGTTCTTATTCAAGATGCCATGGGTGAGAAGGTCGGACAATTTATTCAGTTTGTGGCAACTTTCATTGGAGGGTTTATCATAGCATTCACTAAGGGGTGGCTTCTAACCGTTATCATGCTATCAATTATTCCACTTCTTATCTTGGCTGGTGCTACGTCAAGCATGGCTATTACAAAAGCATCATCAAAGGGACAAACAGCTTATTCTAAAGCAGCAAGTGTAGTGGAGCAAACCATAGGTTCTATCCGAACTGTTGCATCATTCACTGGGGAGAAGCACTCTATAGCAAAATATAATGAGTCCTTAAACATAGCTTACAAGACTGGCGTGCAAGAAGCGATAGCTTCTGGTTGGGGGTTTAGTATACTCTTTTTTCTCTTTATCGCCAGTTACGGTTTGGCTGTATGGGTTGGTGGGAAACTGGTAATAGATAAAGGATATACTGGAGGGACTGTTGTCACTGTAATTTTTTCTGTATTGATGGGCTCCACCTCTCTTGGGCAGGCATCTCCAAGCTTGAGTGCTTTTGCTGCTGGAAAAGCTGCAGCTTATAAGCTCTTTGAGACAATTAATAGGAAACCAGAAATTGATGCTGATGATGCTACTGGTCTGCAGCCTGAAGACATTCGTGGGGATATAGAACTCAGGGAGGTTTGTTTTAGTTATCCTACAAGACCAGATGAACTGATATTCAATGGATTTTCTCTTTCAATACCAAGTGGTACTACTGCAGCTCTAGTAGGGCAAAGTGGGAGTGGAAAATCCACAGTTGTTAGCTTGTTAGAGAGATTCTATGATCCGCAGGCCGGTGAAGTTCTCATTGACCGTATCAACCTTAAAGAATTTAAGCTGAAATGGATCAGACAGAAGATAGGCCTAGTAAGCCAGGAGCCGGCTCTCTTTACTTGTAGTATTAAAGAGAATATTGCCTATGGCAAGGATGGTTCAACTGATGAAGAAATAAGAGCTGCAGCAGAACTTGCTAATGCTGCCAAATTTATAGATAAACTTCCTCAGGGACTAGACACAATGGTTGGTGAGCATGGAATTCAGCTCTCTGGGGGTCAAAAGCAGAGAGTTGCAATAGCTAGAGCAATTCTGAAAGACCCTAGAATCCTACTTCTTGATGAAGCTACAAGTGCCCTTGATGCTGAATCTGAGAGAATTGTACAAGAGGCTTTGGACAGAATAATGATAAACCGAACAACTGTCATTGTAGCCCACCGCTTAAGCACTATAAAGAACGCGGATACCATTGCTGTTATTCATCAAGGAAGGATAGTTGAAAGAGGTTCACATGCTGAGCTCACCAAGGATCCTGATGGAGCCTATAGCCAGCTCATTAGACTGCAAGAAATAAAGGGATCAGAACAAAATGTTGCAAATGACACAGAAAAGCCAGAAAGTATAGTTCACTCTGGAAGAATATCAAGTCAAAGATCCCTTTCCATACGTTCTATAAGCCAGGAGTCATTTGGAGTTGGAAACAGCGGTCGTCTGTCATTGTCAGCATCATTTGGTGTGCCCACAAAAGTTGGCATCTCGGAACTTGCAGATGGAGGATCTCAAGCTCTTCCGTCATCAGTTTCTTCACCACCAGGAGTTCCTCTTTGCCGCCTGGCTTCTTTAAATAAGCCTGAGATTCCGGTCTTACTGCTAGGGACTATTGCTGCATTTATACAAGGAGTAACAATGCCTATTTTTGGGCTCTTGCTTTCCAAAATGATAACTATTTTCTATGAGCCACCTCATGAACTTCGTAAAGATTCAAAAGTTTGGGCACTGGTGTTTCTCGGGCTTGGTGTGGCATCATTAATAGCTGTTCCAAGTAAGTTCTACTTTTTTGGTGTTGCTGGTGGTAAGTTGATCAAAAGGATCCGAAAAATGTGTTTTGAGAAAGCTGTTCACATGGAAATAAGTTGGTTTGATGAAGCTGAGCATTCAAGCGGTGCAATTGGAGCAAGGCTCTCTACTGATGCAGCTTCTGTTCGAGGCTTGGTTGGGGATGCACTTGGTTTGCTGGTTGAAAATATTTCTGCTGCAATAGCGGGCTTGGTAATTGCTTTTCAAGCCAGCTGGCAACTTGCGCTTATAGTCCTTGCTCTGGCACCTCTATTAGGACTGAATGGATATGCGCACGCTAAGTTCTTGAAAGGATTCACCGGTGATGCTAAGAAATTGTACGAGGATGCGAGTCAAGTGGCAAATGATGCTGTAGGGAGTATAAGAACAGTTGCTTCTTTCTGTGCTGAGGAGAAGGTGATGGCATTATATCAGGAAAAATGTGAGGGGCCAATTCAGACAGGCATAAGGCGGGGGATATTAAGTGGAGTAGCTTATGGGGTATCTTTCTTCTTGCTATTTGCAGTTTACGCATGCAGCTTTTATGCTGGAGCCCGACTTGTAGAGGACGGCAAATCAACATTCTCCGATGTTTTCCGTGTCTTTTTTGCTCTCAGCATGGCAACTCTGGGAATCTCTCAATCTGGGTCCTTGGTCCCTGATTCAGCTAATGCAAAAAGTGCTGCTGCTTCTGTATTTGCGATCCTTGATCGGAAGTCACAAATAGACTCCAGTGATGAGTCTGGAATAACATTAGAAGAAGTCAAGGGAGAAATTGTTTTTAACCATGTCAGTTTCAAGTATCCTACCAGACCTGATGTACAAATATTCAGAGATCTTTGCTTGACCATTCACAGTGGCAAGACAGTTGCACTGGTGGGGGAAAGTGGAAGTGGAAAATCAACAGTGATCTCACTACTACAAAGATTTTATGACCTGGATTCAGGTAGCATTACACTGGATGGAAACGAAATCCAAACGCTGCAAGTGAAGTGGCTAAGGCAACAGATGGGCATGGTAAGCCAAGAGCCAGTGCTGTTTAATGAAACCATCAGAGCCAATATTGCATATGGAAAAGGAGGAAATGCAACAGAGGCAGAAATCATAGCTGCAGCAGAACTGGCAAATGCCCACAATTTCATTAGTAGTTTGCAGAAGGGCTATGACACAATAGTAGGTGAGAGAGGAATTCAACTATCTGGGGGACAGAAGCAGCGGGTGGCAATTGCACGAGCTATAGTGAAGAATCCAAAGATATTATTACTAGATGAAGCCACAAGTGCACTTGATGCCGAGTCTGAAAAAGTGGTTCAGGATGCACTTGACCGTGTTATGGTGGAGCGAACCACAATAGTTGTGGCTCACAGGTTATCCACTATTAAGGGTGCAGATTTAATTGCAGTGGTTAAGAATGGGGTCATAGCAGAGAAAGGAAAGCATGAAACATTACTCCAAAAGGGTGGTCACTATGCTTCTTTAGTAGCATTGCACACAAGTGCTTCTTCAAATTAG 3852 0.4286 MVGDNSLDGDIASLQLDVDHDNKQDSETSKAKDETINSVPLHKLFSFADSLDHLLMFVGTVGAIGSGVTMPLMIFILGDMIDAFGGSKNTKELVDDVSKVSLKFVYLAVGAFIEGLLQLSCWMITGERQAARIRGLYLQNILRQDVSFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGQFIQFVATFIGGFIIAFTKGWLLTVIMLSIIPLLILAGATSSMAITKASSKGQTAYSKAASVVEQTIGSIRTVASFTGEKHSIAKYNESLNIAYKTGVQEAIASGWGFSILFFLFIASYGLAVWVGGKLVIDKGYTGGTVVTVIFSVLMGSTSLGQASPSLSAFAAGKAAAYKLFETINRKPEIDADDATGLQPEDIRGDIELREVCFSYPTRPDELIFNGFSLSIPSGTTAALVGQSGSGKSTVVSLLERFYDPQAGEVLIDRINLKEFKLKWIRQKIGLVSQEPALFTCSIKENIAYGKDGSTDEEIRAAAELANAAKFIDKLPQGLDTMVGEHGIQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMINRTTVIVAHRLSTIKNADTIAVIHQGRIVERGSHAELTKDPDGAYSQLIRLQEIKGSEQNVANDTEKPESIVHSGRISSQRSLSIRSISQESFGVGNSGRLSLSASFGVPTKVGISELADGGSQALPSSVSSPPGVPLCRLASLNKPEIPVLLLGTIAAFIQGVTMPIFGLLLSKMITIFYEPPHELRKDSKVWALVFLGLGVASLIAVPSKFYFFGVAGGKLIKRIRKMCFEKAVHMEISWFDEAEHSSGAIGARLSTDAASVRGLVGDALGLLVENISAAIAGLVIAFQASWQLALIVLALAPLLGLNGYAHAKFLKGFTGDAKKLYEDASQVANDAVGSIRTVASFCAEEKVMALYQEKCEGPIQTGIRRGILSGVAYGVSFFLLFAVYACSFYAGARLVEDGKSTFSDVFRVFFALSMATLGISQSGSLVPDSANAKSAAASVFAILDRKSQIDSSDESGITLEEVKGEIVFNHVSFKYPTRPDVQIFRDLCLTIHSGKTVALVGESGSGKSTVISLLQRFYDLDSGSITLDGNEIQTLQVKWLRQQMGMVSQEPVLFNETIRANIAYGKGGNATEAEIIAAAELANAHNFISSLQKGYDTIVGERGIQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVERTTIVVAHRLSTIKGADLIAVVKNGVIAEKGKHETLLQKGGHYASLVALHTSASSN* 1284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1429 1283 Pfam ABC transporter transmembrane region 717 987 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja4g1429 1283 Pfam ABC transporter transmembrane region 56 329 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja4g1429 1283 SUPERFAMILY ABC transporter transmembrane region 42 363 IPR036640 GO:0005524|GO:0016021
Lja4g1429 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 617 IPR027417 -
Lja4g1429 1283 CDD ABC_MTABC3_MDL1_MDL2 1039 1274 - -
Lja4g1429 1283 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1039 1276 IPR003439 GO:0005524
Lja4g1429 1283 Pfam ABC transporter 398 546 IPR003439 GO:0005524
Lja4g1429 1283 SUPERFAMILY ABC transporter transmembrane region 705 1019 IPR036640 GO:0005524|GO:0016021
Lja4g1429 1283 ProSitePatterns ABC transporters family signature. 1179 1193 IPR017871 GO:0005524
Lja4g1429 1283 ProSitePatterns ABC transporters family signature. 518 532 IPR017871 GO:0005524
Lja4g1429 1283 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 718 1004 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja4g1429 1283 Pfam ABC transporter 1059 1207 IPR003439 GO:0005524
Lja4g1429 1283 Gene3D - 1029 1283 IPR027417 -
Lja4g1429 1283 Gene3D - 377 630 IPR027417 -
Lja4g1429 1283 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 21 1279 - -
Lja4g1429 1283 CDD ABC_MTABC3_MDL1_MDL2 379 617 - -
Lja4g1429 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1028 1276 IPR027417 -
Lja4g1429 1283 CDD ABC_6TM_Pgp_ABCB1_D1_like 56 340 - -
Lja4g1429 1283 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 57 344 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja4g1429 1283 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 379 615 IPR003439 GO:0005524
Lja4g1429 1283 PANTHER - 21 1279 - -
Lja4g1429 1283 Gene3D ABC transporter type 1, transmembrane domain 102 1013 IPR036640 GO:0005524|GO:0016021
Lja4g1429 1283 SMART AAA_5 1066 1259 IPR003593 -
Lja4g1429 1283 SMART AAA_5 406 599 IPR003593 -
Lja4g1429 1283 CDD ABC_6TM_Pgp_ABCB1_D2_like 707 1022 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1429 Lja-Chr4 12947432 12953453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1429 13 623 Calmodulin-binding Proteins AT2G36910 37.073 3.64e-116 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1429 K05658 - gmx:100800293 1958.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1429 4 12947432 12953453 Lja4g1429 4 12947432 12953453 ECH