Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1424 ATGGTGTTGGTAAACAACTTTGGTGTGAACAAGAACAACAACAACAAGAACAACCAGAGTCATGAGGGAATGAGACTTGGGAAATATGAATTGGGTAGAACTCTTGGTGAAGGCAATTTTGGCAAAGTCAAGTTTGCTAAGAACATTGATTCTGATCAACCTTTTGCCATTAAGATCATTGACAAGAACAAGATCATTGATCTCAATATCACCAACCAGATAAAGAGGGAAATAGCTGCCTTGAAGCTTCTCAGACATCCTAATGTTGTTAAATTATACGAGGTCTTGGCTAGCAAAACAAAAATTTATATGGTACTTGAGTATGTCACAGGAGAGGAGTTATTTGACAAAATTGTATCCAAGGGTAAACTTAATGAAGATAAAGGTAGAAAGCTGTTCCAACAGTTGATTGATGGTGTGAGCTACTGCCACAGTAAAGGTGTCTTTCATCGGGATCTTAAGCTCGAGAATGTACTGGTGGATACCAAAGGAAATGTAGAGATAACAGATTTTGGCCTTAGTGCTATGCAGCAGCAGTTTAGGGCAGATGGATTGCTGCATACAACTTGTGGAAGTCCCAATTATGTTGCGCCGGAGATTATTGCTAATAGGGGCTATGACGGTGCAACATCAGATGTGTGGTCATGTGGCGTTATCTTGTATGTGATCCTAACCGGATACCTACCTTTTGATGATAGAAATCTTGCAGTTCTCTATCAAAAGATTTTTAAAGGAGATGTTCAGATACCAAAATGGCTATCAGCTGGTGCACAGAACATTATAAAGAGGATTCTTGATCCCAACCCTGAGACGCGGATAACAATGGCCGGTATCAAAGAAGATCCATGGTTCAAGCAGGACTATACTCCAGCAGATCCTGATGATGAGGAAGATGATGTATATATTGACGACGACGCCTTTTCCATCCATGAATTGCAGCATGAAGAAGAACATAGGAGTCCAGGATCGCCGACCCAAATCAACGCATTTCAGTTGATAGGGATGTCTTCATTCCTAGACCTCTCTGGATTTTTTGAGCAAGAGCATGTCTCTGAGAGGAAGATAAGGTTTACATCAAATCTTTCAGCCAAAGATCTGATAGAGAGGATTGAGGATACTGTGACAGAAATGGGATTTAGAGTCCAGAAGAAAAATGGCAAATTGAAAGTGATCCAAGAGAACAAGGTGCAAAAATCTCTAGGCTGTCTCTCAGTGATAGTAGAGGTCTTTGAAATAAGCCCATCACTGTTTGTAGTGGAATTGAGGAAGTCTTGTGGAGATGCCTCTGTATATAGACAGTTATGCAAGAAGTTATTGAATGATTTGAGTGTTCCTCCAAGGCAAGCACTAGTAAGCTCAGAAGTGAATTAG 1371 0.4048 MVLVNNFGVNKNNNNKNNQSHEGMRLGKYELGRTLGEGNFGKVKFAKNIDSDQPFAIKIIDKNKIIDLNITNQIKREIAALKLLRHPNVVKLYEVLASKTKIYMVLEYVTGEELFDKIVSKGKLNEDKGRKLFQQLIDGVSYCHSKGVFHRDLKLENVLVDTKGNVEITDFGLSAMQQQFRADGLLHTTCGSPNYVAPEIIANRGYDGATSDVWSCGVILYVILTGYLPFDDRNLAVLYQKIFKGDVQIPKWLSAGAQNIIKRILDPNPETRITMAGIKEDPWFKQDYTPADPDDEEDDVYIDDDAFSIHELQHEEEHRSPGSPTQINAFQLIGMSSFLDLSGFFEQEHVSERKIRFTSNLSAKDLIERIEDTVTEMGFRVQKKNGKLKVIQENKVQKSLGCLSVIVEVFEISPSLFVVELRKSCGDASVYRQLCKKLLNDLSVPPRQALVSSEVN* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1424 456 SUPERFAMILY Protein kinase-like (PK-like) 26 327 IPR011009 -
Lja4g1424 456 Gene3D Transferase(Phosphotransferase) domain 1 109 291 - -
Lja4g1424 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Lja4g1424 456 ProSiteProfiles Protein kinase domain profile. 29 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1424 456 PANTHER SERINE/THREONINE KINASE 20 452 - -
Lja4g1424 456 Pfam NAF domain 324 383 IPR004041 GO:0007165
Lja4g1424 456 ProSitePatterns Protein kinases ATP-binding region signature. 35 58 IPR017441 GO:0005524
Lja4g1424 456 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 20 452 - -
Lja4g1424 456 CDD CIPK_C 328 439 - -
Lja4g1424 456 ProSiteProfiles NAF domain profile. 322 346 IPR018451 GO:0007165
Lja4g1424 456 Pfam Protein kinase domain 29 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1424 456 Gene3D Kinase associated domain 1, KA1 322 444 - -
Lja4g1424 456 SMART serkin_6 29 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1424 456 Gene3D Phosphorylase Kinase; domain 1 12 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1424 Lja-Chr4 12893967 12898668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1424 92 452 CBL-interacting serine-threonine protein kinases AT3G17510 71.350 3.69e-178 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lja4g1424 Pkinase 2.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1424 K07198 - gmx:100777468 696.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1424 4 12893967 12898668 Lja4g1424 4 12893967 12898668 ECH
Lja4g1424 4 12893967 12898668 Lja6g1930 6 47002240 47008892 PCT