Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1420 ATGGCTTCTGATCTGAGTTCGGGGTTGTCGAAGAAAACTGTTCTCGGGTTGAAAGCATGGGAGTTAATGGGGTTAATAGTTGGGTTGTTCATTATAATCATTCTCATGGTTCTATCAATATGTCTTTCTTCAAGAAAGAAATCCAGAAGAGTCAATGGCATGCTTCCCCTGAGACATATGTTATCGGTTTCGGATGAGATCAAAGAGATTAGGGTTGATCAAGCTTCAGCAAATAATCATCCTCAGAACGGCGCTTTTGTGAGTCTGTATGACAAGTATAGTGACAGGGATTCTGAAAAGGTTTTGATCAATGGAGAAAATAACAGTCAATCAGGCTCATTCATTCATGTTGAGAAAGATGCTAATGGCTCTCAGTCAAGCGATGAGAGCGGCGCTAAGTCGGTTTCTGTCTACAATTCTTCTTCCCATCCTATAAGTGCACCATCCCCTTTGTCTGGTCTTCCTGAATTCTCTCAACTTGGCTGGGGGCACTGGTTTACATTGAGGGACCTAGAAAATGCAACAAACAAGTTTTCAAAAGACAATATTATTGGTGAAGGTGGATACGGAGTCGTTTATCAAGGCAAGCTAGTCAATGGGAGTCCTGTCGCTGTTAAGAAGCTACTCAATAATCTAGGACAAGCTGAAAAGGAATTTAGGGTGGAAGTTGAGGCTATTGGTCATGTGCGGCACAAGAACTTGGTTAGACTTTTGGGCTATTGCATTGAAGGCACTCATAGGTTGTTGATTTATGAGTATGTTAACAATGGCAATTTAGAGCAATGGCTTCATGGAGCCATGCGGCAGTATGGTTATCTTACATGGGAAGCTCGGATCAAAGTTCTTCTTGGAACGGCCAAAGCGCTGGCTTACTTGCACGAGGCAATTGAACCAAAAGTCGTCCATCGAGATATTAAGTCAAGCAATATTCTAATTGATGATGACTTCAATGCAAAAATATCCGACTTTGGGCTGGCTAAGTTAATCGGTGCTGGAAAAAGTCATATTACAACTCGAGTAATGGGTACTTTTGGATATGTGGCTCCAGAATATGCAAACTCTGGCATACTAAATGAGAAGAGTGATGTTTATAGCTTTGGGGTGTTGCTTCTTGAAGCAATTACTGGAAGAGACCCGGTGGACTATAGCCGACCTGCAACTGAGGTAAATTTGGTTGATTGGCTCAAGATGATGGTAGGGGGAAGGCGTTCAGAAGAGGTTGTGGATCCTAACATTGAAACCAGACCTTCAACAAGTGCCCTAAAACGGGTCCTGTTGACTGCTTTGAGGTGTGTCGACCCAGATGGTGAAAAAAGACCAAAGATGAGTCAAGTTGTCCGCATGCTCGAATCAGAAGAATATCCGATACCTCGAGAGGATCGAAGACGCAGAAGGAGTCAAGCAGGAAATATAGTGGATGGCCAAAAGGAGACTTCTGATACAGAGAAGAGTGATAATCCAGATTCGAAGTCCACTGGCCAAAGGAACCATAGGAAGTAG 1500 0.4307 MASDLSSGLSKKTVLGLKAWELMGLIVGLFIIIILMVLSICLSSRKKSRRVNGMLPLRHMLSVSDEIKEIRVDQASANNHPQNGAFVSLYDKYSDRDSEKVLINGENNSQSGSFIHVEKDANGSQSSDESGAKSVSVYNSSSHPISAPSPLSGLPEFSQLGWGHWFTLRDLENATNKFSKDNIIGEGGYGVVYQGKLVNGSPVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRLLIYEYVNNGNLEQWLHGAMRQYGYLTWEARIKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKISDFGLAKLIGAGKSHITTRVMGTFGYVAPEYANSGILNEKSDVYSFGVLLLEAITGRDPVDYSRPATEVNLVDWLKMMVGGRRSEEVVDPNIETRPSTSALKRVLLTALRCVDPDGEKRPKMSQVVRMLESEEYPIPREDRRRRRSQAGNIVDGQKETSDTEKSDNPDSKSTGQRNHRK* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1420 499 Gene3D Phosphorylase Kinase; domain 1 158 253 - -
Lja4g1420 499 MobiDBLite consensus disorder prediction 449 493 - -
Lja4g1420 499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 300 312 IPR008271 GO:0004672|GO:0006468
Lja4g1420 499 MobiDBLite consensus disorder prediction 449 499 - -
Lja4g1420 499 CDD STKc_IRAK 184 450 - -
Lja4g1420 499 Pfam Protein kinase domain 179 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1420 499 MobiDBLite consensus disorder prediction 120 139 - -
Lja4g1420 499 Gene3D Transferase(Phosphotransferase) domain 1 254 466 - -
Lja4g1420 499 SMART serkin_6 178 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1420 499 SUPERFAMILY Protein kinase-like (PK-like) 162 457 IPR011009 -
Lja4g1420 499 ProSitePatterns Protein kinases ATP-binding region signature. 184 207 IPR017441 GO:0005524
Lja4g1420 499 PANTHER OS01G0323000 PROTEIN 2 499 - -
Lja4g1420 499 ProSiteProfiles Protein kinase domain profile. 178 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1420 499 PANTHER RECEPTOR-LIKE KINASE PLANT 2 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1420 Lja-Chr4 12862509 12867082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1420 16 452 Trihelix Transcription Factor Family AT1G70460 40.724 2.53e-97 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Lja4g1420 Pkinase 3.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1420 - - gmx:100793499 874.004
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1420 4 12862509 12867082 Lja4g1420 4 12862509 12867082 ECH
Lja4g1420 4 12862509 12867082 Lja6g1923 6 46934583 46939919 PCT