Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1419 ATGGGTTGCTTTGGCTTTTGCAAAGGAAATGATGCTTATACAACTGCTGACAAAGGAGGACCCTTCATGCAAACCTATCCTACTGGGAACAATAGTTATCATGGCAGACACACACCAATAATAACTCCGCCAACTATAAATTTTCAACCAATTGCTGTCCCTTCCCTTTCCATAGATGAATTGAAGTCTGTTACAGATAATTTTGGATCAAAATCTTTCATTGGTGAGGGTGCATATGGGAAAGTATATCGTGCGACATTGAAAAATGGACGTGAAGTGGCGATTAAAAAGCTAGATTCCAGTAAGCAGCCAGACCAGGAATTGCTTTCTCAGGTATCTGTGGTATCAAGGCTAAAGCATGAAAATGTTGTTGAGCTTGTTAGTTATTGCGTTGATGGTCCTTGTCGCGCCCTTGCCTATGAGTATGCTCCTAATGGATCCCTTCATGATATTATACATGGACGCAAAGGTGTCAAGGGTGCACAACCTGGTTTAGTTCTCTCATGGACTCAGAGAGTTAAAATTGCTGTTGGAGCAGCCAGAGGACTTGAATATCTCCATGAGAAGGCAGAGACACATATTATCCATCGTTACATTAAATCTAGTAACATACTGCTTTTCGATGACGACGTTGCAAAGATTGCTGATTTTGATTTGTCAAACCAAGCCCCCGATGCAGCAGCACGTCTTCATTCTACCCGTGTTCTTGGAACCTTCGGTTATCATGCTCCAGAATATGCAATGACTGGGCAACTCACTTCAAAAAGTGATGTTTACAGTTTTGGAGTTGTACTTTTGGAACTCCTAACCGGGCGTAAACCTGTTGATCATACACTGCCTCGAGGACAGCAAAGCCTTGTTACATGGGCCACACCAAAGCTTAGTGAAGATAAGGTAAAGCAGTGTGTTGATGCTAGACTAAAGGGAGAGTACCCGGTTAAGTCAGTTGCAAAGATGGCTGCTGTTGCTGCACTGTGTGTGCAATATGAAGCTGAGTTTCGGCCAAACATGAGCATCATAGTGAAAGCTCTACAGCCTCTACTGAATACTCGCTCAACTCTTCCAAAGGAAGTGCGCCACATGTAA 1086 0.4319 MGCFGFCKGNDAYTTADKGGPFMQTYPTGNNSYHGRHTPIITPPTINFQPIAVPSLSIDELKSVTDNFGSKSFIGEGAYGKVYRATLKNGREVAIKKLDSSKQPDQELLSQVSVVSRLKHENVVELVSYCVDGPCRALAYEYAPNGSLHDIIHGRKGVKGAQPGLVLSWTQRVKIAVGAARGLEYLHEKAETHIIHRYIKSSNILLFDDDVAKIADFDLSNQAPDAAARLHSTRVLGTFGYHAPEYAMTGQLTSKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVKQCVDARLKGEYPVKSVAKMAAVAALCVQYEAEFRPNMSIIVKALQPLLNTRSTLPKEVRHM* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1419 361 Pfam Protein tyrosine and serine/threonine kinase 73 344 IPR001245 GO:0004672|GO:0006468
Lja4g1419 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 356 - -
Lja4g1419 361 CDD STKc_IRAK 74 347 - -
Lja4g1419 361 ProSitePatterns Protein kinases ATP-binding region signature. 74 97 IPR017441 GO:0005524
Lja4g1419 361 ProSiteProfiles Protein kinase domain profile. 68 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1419 361 SUPERFAMILY Protein kinase-like (PK-like) 42 344 IPR011009 -
Lja4g1419 361 Gene3D Phosphorylase Kinase; domain 1 42 142 - -
Lja4g1419 361 Gene3D Transferase(Phosphotransferase) domain 1 143 359 - -
Lja4g1419 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 356 - -
Lja4g1419 361 PIRSF ILK 32 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1419 Lja-Chr4 12856872 12861197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1419 49 350 Receptor kinase-like Gene Family AT4G02010 49.367 2.26e-90 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Lja4g1419 PK_Tyr_Ser-Thr 4.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1419 K13436 - gmx:547596 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1419 4 12856872 12861197 Lja4g1419 4 12856872 12861197 ECH