Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1418 ATGGAGGCTGAATTTGGAGGAAAGAATCCATTTTTGTATGGACCAGAAATGAAGGGTGTTGGCAATGGGAAGAGGAGTTTGGAATGGGATTTGAATGACTGGAAATGGGATGGTGATCTTTTCACTGCTCAGCCTCTCAATTCAGTGCCATCAGATTGTAGGGGTGGCCAGTTTTTCCCACCTGCTCCTGAATTTCCAGCAAAAACTGCTAATTTGTCTTCCAATTTGTCTGCTTCTGTCAACTCAGGAGAGGGAAAGAGAGAGTTGGAGAAAAGGAGGAGGGGTGTTACTGTTAGAGGTGAAGGTGAAGGGGATGAAGGCAATGATGGAAATGGTTCTCTTAATTTGAACCTTGGAGGTCAAGTTTACCCTGTCATGGTAGAAGGGGAGGAAAAAATTGGAAAGAAGACAAGGGTAATTGAGACTACCGCTACCGCCACCACCTTTAACCGTGCTGTGTGTCAAGTTCAAGATTGTAGGGCTGATCTTAGCAGTGCTAAGGATTACCACCGCCGGCACAAGGTTTGTGAAGGGCATTCTAAGGCCACCATGGCATTAGTGGGAAATGTTATGCAGCGTTTCTGCCAACAGTGTAGCAGGTTTCATGTTCTCCAAGAGTTTGATGAAGGGAAAAGAAGTTGTCGTAGGCGTCTGGCTGGCCATAATAGAAGGAGGAGGAGGAAAACTCATCCTGATGCTGAAGTTAATGGAGAGGCTCTAAACGATGAAAGGGGCAGTAGCTATCTGTTAACAAGTCTGATAAGGATACTTTCCAATATGCATTCAAATAGCTCAGATCATACAAGGAACAATGATATTCTCTCTCATCTACTGAGGAACCTGGCAAGTCTGGCTGGTACAATTAATGGAAGAAGTCTAGCCTCCATATTAGAGGGATCTCAAGGTTTGGTAAATGCTGGGACACCTAGACTTGAGCACAATGTGCCTATCCTTAATTCAAGTGGTCTTGAAACTTCCAGGCCTTCTGGTTCTTCCATCAAGACAGATAATGACTTCATCCATCAGGACCCTCCAAATTCTGCTGCGCATTGTGAGACCTTACCTGCGTATGGTATAGGGCAAAAATGTATACCTCTGGGCGATGGTGGAGTGAGAAATATTAAACCTCCTTCAGGACCACATCCCTCGAATTTACTTCTATCAAGAGACAGCCTTCCATCTGAATTAATTGCAGCACAAACGACAGCTGGAAGGAACAGCTTAAATAACATTGACCTGAATAATGTATATGATGATGCGCAGAATGGTGTTGAGAAGAAGACTCATCCTCCTGTAGCTTCGGAGATTGGGTCCACATATCTTCCTTCATGGTTGCGAAGTGACTCTCTCAAGTCAACTCCACCACAGACAAGTAGAAATTCAGATTCAACCTCTACCCGATCACCATCTAGTTCCAGTGGAGAAGCTCAGAGTCGCACAGATCGAATAGTTTTCAAACTATTTGGCAAGGATCCAAGTGATTTTCCCCTTGTTCTCCGATCACAGATCCTCAATTGGTTATCCCACAGTCCAACAGAGATAGAGAGCTATATAAGGCCTGGATGTATCATATTAACAATTTATCTTCGTCTAGAAAAATCTACATGGGAGGAGCTCTGCTCTAATCTAGGATTGAGCTTGAAAAAGCTTATTGCTGCATCAAATGATCCTTTTTGGACAACAGGATGGGTATATACAAGGGTGCAGCATTCTGTGGCTTTTCTGTATAATGGTCAGGTAGTCTTAGATGTGCCCTTGCGTCTCAAAAGTCCACAAGATTGTAGGATTTCATGCATTAAGCCACTTGCTGTTCCTGCAAGTGCAAGCTCTCAATTTATTGTGAAAGGATTTAACCTTTTGCGGTCTAGCACGAGGTTGCTCTGTGCACTTGAAGGGACGTATCTGGTACAAGATAGTTGTCATGATTTAAATGATGGAGCTGATGTAGCCAATGCAGCCATTCAGCGTCTTAGCTTCTCTTGCTATATACCAAATGTATCTGGGAGGGGGTTTATTGAGGTGGAAGATCACGGTCTCGGCTGCTGTTCCTTTCCATTTATAGTTGCAGAGCAAGAAGTTTGTTCTGAAATCTGCAAGTTAGAGACCGTGATTGAGGCAGGTGAGGCCACTGATGTTATCCAGATAACCAACCAGCAGTCGGAAGAAAAGACTCGAGCTTTGGATTTCATACAAGAAATGGGCTGGCTCCTTCACAGACGTCATGTCAATATTCGGCTAGGTCCTGTGTCACCTATCCATGATCTCTTCTGTTTCAATCGATTCATGTGGCTTGTTGACTTCTCCATGGACCATGGTTGGTGTGCTGTGATGAAAAAACTCTTGGACATTTTGTTTGAGGGTGGTGTTGTTGATGCTGGAGAGCATGCCACAATTGAGGTTGCATTGTTAGACATGAGTCTTCTACACAGTGCTGTAAAGAGAAATTGTAGGCCTATGGTGGAACTACTGTTAAAATTTGTGCCGGTTAATACTTCAGATGGCACAGACAGTAAAGTGAAGCAAGTTGACAAGTCCCTCGCCAGATTCTTATTTAGACCTGATGCTGTTGGACCTGGTGGGTTGACTCCTCTTCATGTTGCAGCAAGTATGAGCGGCTCGGAAAATGTGCTGGATGCATTAACTGACGATCCGGGAATGGTTGGAATCGAAGCATGGGAAAGTGCCCGGGACAACACAGGTTTGACACCAAACGACTACGCATCCCTTCGGGGCCATTACACTTACATTCAACTTGTCCAGAAGAAGACCAGCAAAAAAGGTGGAAGGCAATGTGTGCTTGATATCCCTGGCACCCTTGTAGACAGTTACACAAAGCAAAAACAATCAGAAAGGCATGGTACATCCAAAGTTTCAAGTTTGCAGACTGTGAAGATTGAAACAACAACAGTGCCACTTCAATGTGGACTATGCAAGCACAAGCAGGCTTATGGTGGCATGAGACCAGCACTGGTTTATAGACCAGTCATGCTCTCTATGGTGACCATAGCGGCTGTATGTGTCTGCGTGGCCTTGTTCTTCAAAAGCTTGCCTAGAGTTTATATGACCCAGCCCTTTAACTGGGAATCTTTAAAGTACGGTTCAATCTAA 3108 0.4437 MEAEFGGKNPFLYGPEMKGVGNGKRSLEWDLNDWKWDGDLFTAQPLNSVPSDCRGGQFFPPAPEFPAKTANLSSNLSASVNSGEGKRELEKRRRGVTVRGEGEGDEGNDGNGSLNLNLGGQVYPVMVEGEEKIGKKTRVIETTATATTFNRAVCQVQDCRADLSSAKDYHRRHKVCEGHSKATMALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRRKTHPDAEVNGEALNDERGSSYLLTSLIRILSNMHSNSSDHTRNNDILSHLLRNLASLAGTINGRSLASILEGSQGLVNAGTPRLEHNVPILNSSGLETSRPSGSSIKTDNDFIHQDPPNSAAHCETLPAYGIGQKCIPLGDGGVRNIKPPSGPHPSNLLLSRDSLPSELIAAQTTAGRNSLNNIDLNNVYDDAQNGVEKKTHPPVASEIGSTYLPSWLRSDSLKSTPPQTSRNSDSTSTRSPSSSSGEAQSRTDRIVFKLFGKDPSDFPLVLRSQILNWLSHSPTEIESYIRPGCIILTIYLRLEKSTWEELCSNLGLSLKKLIAASNDPFWTTGWVYTRVQHSVAFLYNGQVVLDVPLRLKSPQDCRISCIKPLAVPASASSQFIVKGFNLLRSSTRLLCALEGTYLVQDSCHDLNDGADVANAAIQRLSFSCYIPNVSGRGFIEVEDHGLGCCSFPFIVAEQEVCSEICKLETVIEAGEATDVIQITNQQSEEKTRALDFIQEMGWLLHRRHVNIRLGPVSPIHDLFCFNRFMWLVDFSMDHGWCAVMKKLLDILFEGGVVDAGEHATIEVALLDMSLLHSAVKRNCRPMVELLLKFVPVNTSDGTDSKVKQVDKSLARFLFRPDAVGPGGLTPLHVAASMSGSENVLDALTDDPGMVGIEAWESARDNTGLTPNDYASLRGHYTYIQLVQKKTSKKGGRQCVLDIPGTLVDSYTKQKQSERHGTSKVSSLQTVKIETTTVPLQCGLCKHKQAYGGMRPALVYRPVMLSMVTIAAVCVCVALFFKSLPRVYMTQPFNWESLKYGSI* 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1418 1035 MobiDBLite consensus disorder prediction 73 112 - -
Lja4g1418 1035 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 15 1034 - -
Lja4g1418 1035 ProSiteProfiles Zinc finger SBP-type profile. 151 228 IPR004333 GO:0003677
Lja4g1418 1035 MobiDBLite consensus disorder prediction 445 478 - -
Lja4g1418 1035 Pfam SBP domain 154 228 IPR004333 GO:0003677
Lja4g1418 1035 Gene3D - 150 215 IPR036893 GO:0003677|GO:0005634
Lja4g1418 1035 SUPERFAMILY SBT domain 152 231 IPR036893 GO:0003677|GO:0005634
Lja4g1418 1035 MobiDBLite consensus disorder prediction 84 106 - -
Lja4g1418 1035 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 15 1034 IPR044817 GO:0003677
Lja4g1418 1035 SUPERFAMILY Ankyrin repeat 804 921 IPR036770 -
Lja4g1418 1035 Gene3D - 707 924 IPR036770 -
Lja4g1418 1035 MobiDBLite consensus disorder prediction 219 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1418 Lja-Chr4 12839118 12845048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1418 179 1034 SBP-box Gene Family AT2G47070 45.202 0.0 674
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lja4g1418 SBP 1.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1418 - - gsj:114419913 1466.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1418 4 12839118 12845048 Lja4g1418 4 12839118 12845048 ECH
Lja4g1418 4 12839118 12845048 Lja6g1921 6 46914213 46922217 PCT