Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1416 ATGGCTCAGCTGGCAGGTGCAGATGAGATAGAGTCTCTGAGAATTGAGTTAGCAGAGATTGGAAGGAGTATAAGGTCCTCATTTAGAAGTAATGCATCCAGTTTCCGGAGCATTTCAAGCATCATTCATGTGCAAGAAGATGATGTTGATGAAGGAGATGCCTTACAATGGGCTGAAATCCAGAGGCTGCCCACTTCTGAGAGGGTCACTTCAGCTTTGTTTGATGCACCTGATGGCATGGAAACAGGTGGAAAAACTAAAGGGAAACAGGTGGTTGATGTCAGCAAGCTTGGAGCTCAAGAAAGGCATATGTTCATAGAGAAGCTTTTCAAGCACATTGAAAATGATAATCTTCGATTGTTACAGAAACTCAGGAAAAGAATTGACAAAGTTGGTATTAAGTTGCCCACAGTGGAAGTGAGGTATCAAAATCTTAGTGTTGAAGCAGAGTGCAAGGTAGTTCAGGGCAAGCCCGTACCTACTTTGTGGAACACCCTAAAGGACTTGATCTTTGACATGACAAGATTATCAGTTCTGAAATCTCAAAATTCCAAGATAAGCATCATCAAAGATGCCAATGGAATTATAAAGCCTGGAAGGATGACCTTATTGCTTGGCCCTCCAGCAAGTGGTAAAACAACATTATTATTGGCATTGGCAGGAAAACTTAGCCATTCTCTCCAGGTTCATGGGGACATTTCTTGCAATGGACACATGCTAGAAGAATTTATTCCCCAGAAATCCTCAGCATATGTAAGCCAATATGATTTGCATATTCCAGAGATGACTGTGAGGGAAACACTCGATTTCTCAGCACGTTGTCAGGGTGTAGGAAGCCGAGCTGAACTCCTGATGGAAGTCAGTAGAAGGGAGAAAGAGGCAGGGATAGTACCAGATCCTGATTTAGATGCATATATGAAGGCAACATCAGTTAATGGACTGAAGAGCACCCTTCAAACGGACTATATCTTAAAGATCCTTGGTCTTGATATATGTGCCGATACGTTGGTTGGAGATCCTATTCGAAGAGGTATATCAGGCGGTCAAAAGAAAAGATTAACTACAGGAGAGATGATGGTTGGACCAATGAAAGCTCTATTTATGGATGAAATATCCAATGGTTTAGACAGCTCCACTACTTTCCAGATAATATCTTGCCTTCAGCATCTGGTTCATATCACAGATGTCACTGCATTAATTTCACTTCTTCAGCCAGCACCGGAGACCTTTGATCTCTTTGATGATGTTGTCTTAATGGCAGAAGGGAAAATTGTGTACCATGGCCCACGTGATTATGTACTTGTGTTCTTTGAGGACTGTGGGTTCATATGCCCACAGAGAAAAGGCACAGCTGACTTTCTTCAAGAAGTTATATCAAAAAAAGACCAAGCACAGTATTGGAGCAGGACAGGAGAACATTACAGTTATGTTTCTGTTGACCAGTTCATTAAGAAATTTAAGGATTGTCCTTATGGTCAAAAGCTTCAGGAGGAGCTCTTGAAGCCATTTGATAAGTCTCAGAATCACAAGAATGCTCTCATGTTTACAAAGTACTCATTAACAAAATGGGAATTATTTAAGGCTTGCATGATGAGGGAACTTCTTCTAATGAGAAGAAACTCATTTGTCTATGTATTCAAGTCTGTACAGCTTTTCATTATTGCCTGTATAGCAATGACTGTTTTCATACGAACACGAATGAAGGTTGATGTGCTCCATGGGAATTATTTTATGGGTTCACTGTTCTATTCACTCATCATTCTTCTGGTTGATGGATTTCCAGAACTATCTATGACTGTATCAAGAATTTCAGTTTTTTACAAACAGAAAGAGTTGTGTTTTTTTCCTGCATGGGCTTATACAATCCCATCTGCTATTTTAAAGATTCCACTTTCACTATTGGAATCTTTCATTTGGACAGCACTTTCTTATTATGTCATTGGTTACAGCCCTGATATTGGCAGGTTCTTTCGCCAGTTCCTTCTCCTATTTGTCATACACATGACTTCAGTATCCATGTTTCGATTCATTGCCTCAGTTTTTCAAACTGTGGTTGCTTCTACGATAGCTGGTACCGTGACCATACTAACTGTTTTACTATTTGGTGGCTTCATCATTCCAAAACCATATATGCCATCTTGGTTGCGGTGGGGATTTTGGGTTTCTCCTTTGGCATATGGAGAAATAGGCTTAACTGTGAATGAATTTCTTGCTCCTAGGTGGGAAAAGGTGTCTGCGAACTCAACAATGGGTCAACAAGTACTTGAAAGCCGGGGGCTAAACTTTGATGGTTACTTTTATTGGATATCAACTGGTGCCTTGATTGGGTTCACATTGCTGTTTAATGCAGGTTTTACCTTGTTATTGACTTTCTTGAAAGCTCCTGCAAGGTCTCGCACTCTTATATCTTACGACAAGCATTCAGAGTTACAAGGGAACAAAAAAATCGATGGTAGCTTTGGTGCGGATAAGAAACCTGCTCGTTCTCTGACTGAAAGTACTGTAGAAACCATAAAAGGAGGATTGGTCCTACCTTTCCAGCCACTAACCTTAGCATTTCGTGATGTGCAGTACTATGTTGATACCCCTTTGGAAATGAGAAACAGGGGTTTTACTCAGAAAAAGCTTCAACTCCTTTCTGACATCACAGGCTCATTCAGACCAGGCATACTAACAGCATTGATGGGAGTCAGTGGAGCAGGGAAAACAACTTTAATGGACGTTCTATGCGGAAGAAAAACTGGTGGTATTATAGAAGGAGAGATTAAAATTGGTGGCTACCCAAAGGTTCAGGAAACATTTGCTAGAGTATCAGGTTACTGTGAACAAAATGACATACATTCTTCAAATATAACAGTAGAAGAATCTGTTATGTTTTCTGCCTGGCTTCGGCTTCCTTCTCAGATCGATGCAAAAACTAAAGCTGAATTTGTAAATGAAGTCCTTCATACTATTGAACTTGATGAGATCAAAGATTCTTTAGTAGGCATGCCGAATATTAGTGGTTTATCAACTGAGCAAAGAAAACGCCTGACCATAGCCACTGAGCTTGTTGCTAATCCGTCAATCATATTTCTGGATGAACCGACTTCAGGTCTAGATGCAAGGGCAGCTGCAGTTGTGATGAGAGCAGTGAAGAATGTAGTTGGAACCGGAAGAACTGTTACATGCACTATTCACCAACCAAGTATTGATATATTTGAGGCATTTGATGAGGTGATTCTTATGAAAACTGGAGGACAAATAATCTACTCTGGCCCACTTGGAGAGCACTCAAGTAGAGTCATTGAGTACTTTGAGAGTATACCAGGAGTACCAAAGATTAAAGACAACTATAATCCATCAACTTGGATGCTAGAAGTTACTTCAAGGTCTGCAGAAACTGAACTTGGAGTAGATTTTGCCCAAATTTATAGGGAGTCAACCTTATATAAACAGAACAAAGAGTTAGTTGAGGAATTAAGTTCACCACTTCCGAAGTCCAAAGATTTGTATTTTCCATCTCATTTTCCACAAAATAGTTGGGAACAGTTTAAAGCATGCTTGTGGAAACAACATTTGTCCTATTGGAGAAGTCCTTCATACAACTTGAACCGCATCTTTTTTGTGACTGCTTCATCTCTTCTGTTAGGGATACTGTTCTGGAAGCAAGGAAAGAAAATAAATAGCCAACAAGATCTGTTCAATGTATTTGGTTCAATGTTCTCTGCTGCTCTCTTCTTTGGGATAAATAACTGCTCAACAGTTTTACCATATGTGGCTACAGAGCGTACTGTTCTATACCGTGAAAGATTTGCTGGAATGTACTCTCCCTGGGCCTATTCTTTTGCACAGGTGCTAATTGAGGTTCCCTATTCATTCATTCAAGCTGCTTTATATGTGATAATCACATATCCTATGATTGGTCACTATTGGTCCGCATATAAAATATTCTGGTCATTCTTCAGCATGTTCTGCAGCATATTAAACTTCAACTACCTAGGAATGTTCATTGTTTCCGTGACACCAAATGTTCAATTGGCTTCTATATTGTGTTCATCTTTCTATACAATACTGAATTTATTCTCTGGGTACTTTATGCCACGACCTCAAATGCCTAAATGGTGGGTTTGGATGTATTATTTATGCCCCTTGTCTTGGGCAATGAATGGGATGCTGACTTCACAATATGGAGATATAAACAAAAATATGTCAGTCTTTGAGGATGTCAAAACAGTTGCTACATTTTTAGAAGATTATTATGGGTTTCGCTATGATTTTCTGGGTGTGACTGCTGTTGTTCTCATTGTCTTCCCCATTGTATTTGCCGCTCTATTTGCTTACTGTATTGGAAACCTCAACTTCCAAAGGAGGTAA 4356 0.3981 MAQLAGADEIESLRIELAEIGRSIRSSFRSNASSFRSISSIIHVQEDDVDEGDALQWAEIQRLPTSERVTSALFDAPDGMETGGKTKGKQVVDVSKLGAQERHMFIEKLFKHIENDNLRLLQKLRKRIDKVGIKLPTVEVRYQNLSVEAECKVVQGKPVPTLWNTLKDLIFDMTRLSVLKSQNSKISIIKDANGIIKPGRMTLLLGPPASGKTTLLLALAGKLSHSLQVHGDISCNGHMLEEFIPQKSSAYVSQYDLHIPEMTVRETLDFSARCQGVGSRAELLMEVSRREKEAGIVPDPDLDAYMKATSVNGLKSTLQTDYILKILGLDICADTLVGDPIRRGISGGQKKRLTTGEMMVGPMKALFMDEISNGLDSSTTFQIISCLQHLVHITDVTALISLLQPAPETFDLFDDVVLMAEGKIVYHGPRDYVLVFFEDCGFICPQRKGTADFLQEVISKKDQAQYWSRTGEHYSYVSVDQFIKKFKDCPYGQKLQEELLKPFDKSQNHKNALMFTKYSLTKWELFKACMMRELLLMRRNSFVYVFKSVQLFIIACIAMTVFIRTRMKVDVLHGNYFMGSLFYSLIILLVDGFPELSMTVSRISVFYKQKELCFFPAWAYTIPSAILKIPLSLLESFIWTALSYYVIGYSPDIGRFFRQFLLLFVIHMTSVSMFRFIASVFQTVVASTIAGTVTILTVLLFGGFIIPKPYMPSWLRWGFWVSPLAYGEIGLTVNEFLAPRWEKVSANSTMGQQVLESRGLNFDGYFYWISTGALIGFTLLFNAGFTLLLTFLKAPARSRTLISYDKHSELQGNKKIDGSFGADKKPARSLTESTVETIKGGLVLPFQPLTLAFRDVQYYVDTPLEMRNRGFTQKKLQLLSDITGSFRPGILTALMGVSGAGKTTLMDVLCGRKTGGIIEGEIKIGGYPKVQETFARVSGYCEQNDIHSSNITVEESVMFSAWLRLPSQIDAKTKAEFVNEVLHTIELDEIKDSLVGMPNISGLSTEQRKRLTIATELVANPSIIFLDEPTSGLDARAAAVVMRAVKNVVGTGRTVTCTIHQPSIDIFEAFDEVILMKTGGQIIYSGPLGEHSSRVIEYFESIPGVPKIKDNYNPSTWMLEVTSRSAETELGVDFAQIYRESTLYKQNKELVEELSSPLPKSKDLYFPSHFPQNSWEQFKACLWKQHLSYWRSPSYNLNRIFFVTASSLLLGILFWKQGKKINSQQDLFNVFGSMFSAALFFGINNCSTVLPYVATERTVLYRERFAGMYSPWAYSFAQVLIEVPYSFIQAALYVIITYPMIGHYWSAYKIFWSFFSMFCSILNFNYLGMFIVSVTPNVQLASILCSSFYTILNLFSGYFMPRPQMPKWWVWMYYLCPLSWAMNGMLTSQYGDINKNMSVFEDVKTVATFLEDYYGFRYDFLGVTAVVLIVFPIVFAALFAYCIGNLNFQRR* 1452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1416 1451 CDD ABCG_PDR_domain2 848 1086 IPR034003 -
Lja4g1416 1451 Pfam Plant PDR ABC transporter associated 741 802 IPR013581 -
Lja4g1416 1451 Pfam ABC transporter 190 372 IPR003439 GO:0005524
Lja4g1416 1451 Pfam ABC-2 type transporter 525 736 IPR013525 GO:0016020|GO:0140359
Lja4g1416 1451 Pfam ABC-2 type transporter 1176 1389 IPR013525 GO:0016020|GO:0140359
Lja4g1416 1451 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 441 IPR027417 -
Lja4g1416 1451 Pfam ABC transporter 879 1031 IPR003439 GO:0005524
Lja4g1416 1451 CDD ABCG_PDR_domain1 184 428 IPR034001 -
Lja4g1416 1451 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 863 1092 IPR027417 -
Lja4g1416 1451 Pfam ABC-transporter N-terminal 114 164 IPR029481 -
Lja4g1416 1451 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 173 446 IPR003439 GO:0005524
Lja4g1416 1451 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 45 1451 - -
Lja4g1416 1451 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 864 1104 IPR003439 GO:0005524
Lja4g1416 1451 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 3-LIKE 45 1451 - -
Lja4g1416 1451 Pfam ABC-2 type transporter 404 459 IPR043926 GO:0140359
Lja4g1416 1451 Pfam ABC-2 type transporter 1060 1121 IPR043926 GO:0140359
Lja4g1416 1451 SMART AAA_5 198 431 IPR003593 -
Lja4g1416 1451 SMART AAA_5 888 1080 IPR003593 -
Lja4g1416 1451 Gene3D - 862 1100 IPR027417 -
Lja4g1416 1451 Gene3D - 174 437 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1416 Lja-Chr4 12823483 12834742 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1416 864 1063 Calmodulin-binding Proteins AT2G36910 24.880 1.16e-06 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1416 K08711 - gmx:100783980 2495.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1416 4 12823483 12834742 Lja4g1416 4 12823483 12834742 ECH