Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1415 ATGGAGTTAACTCCAAGATCCTTAACTCCAAGATCCTTGACTCCAAGATCCTTGACACCAAGATCATTGACACCAAGATCCATAACTCCACTTTCCTTAACCCCAAGAGCTTTGACTCCAAGAGGGATAACTCAAGGCCATGGCTTCACCTTTGACAGAGATGCTGACTCTTTTGTTGAGGAAGATAGGGAGCTTCAGTCAAAGTGGGCTGCTATTGAGAAACTTCCCACTTTCAAAAGAATTCAAACTTCTTTTGTTGATGTTACTCAGGAGGAGGGTGTAGGCACCAGCAAAGAAGCAGATGGCAGAAGGGTAATTGATGTCACCAAGCTTGGAGCGGTGGAGAAGCGTTTGTTCATAGATAAGCTCATTAGGCACATTGAAAATGATAATCTTCAACTTCTGCAGAAACTCAGAGAAAGGATGGACAGAGTCAATGTGAAGTTACCTACTGTGGAGGTCAAATACAAGAACCTAAATGTAGAAGCAGAATATGAGGTTGTTCAAGGGAAGCCACTCCCTACTCTATGGAACTCTTTTTCCAGCTTTTTGTCAGGTTTCATGAAAACTATATCATGCACTTCACAAGGAGCCAGTATAAGCATTCTGAATGATGTCAGTGGCATCATAAAGCCAGCAAGGCTTACTCTTCTTCTTGGTCCACCCGGCTGTGGGAAAACAACCTTGTTATTGGCATTGGCTGGAAAGCTAGAGCAATCTCTCAAGGTTTCTGGAGAAATCTCTTACAATGGTCACAAGCTAGATGAATTTGTCCCTCAAAAAACATCAGCTTACATTAGCCAGTATGACCTGCACATTCCTGAGATGACAGTGAGAGAAACAATTGACTTTTCAGCACGCTGTCAAGGGGTTGGAAGCAGAGCTGATATATTGGCTGAACTCAACAGGAGAGAAGAAGAAGAAGGAGTCATCCCTGACCCAGATATTGATACCTATATGAAGGCAATTGCAGTTGAGGGACAAAGCGAAAATCTTCAAACGGAATATGTTTTAAAGATTCTTGGACTGGATATGTGTGCTGACATACTGATTGGTGATGCACTAGAGAGAGGCATTTCAGGTGGACAGAAGAAAAGGCTAACTACAGGTGAGATGATTGTTGGTCCCATAAAAGCTCTTTTCATGGATGAAATATCAACTGGCTTAGATAGCTCCACAACCTTTCAAATAGTTACATGTCTCCAGCAATTGGCACATCTCACAGATTCTACTGCAGTTCTTTCACTCCTTCAACCAGCACCGGAAACCTTTGAGCTATTTGATGATCTTATATTGATGGCAGAGGGGAAGATAGTATACCATGGTCCCTGCCATCAAGCAATTCAATTTTTTAGGGATTGTGGTTTCTGGTGCCCAGAAAGAAAAGGAGTGGCAGACTTCCTTCAAGAGGTCATTTCTAAGAAAGATCAAAGGCAATACTGGTACCGCACAGATATTCCTTACACTTATGTTTCAGTGGATGAATTCGCTGAAATCTTCAAAACAAGTTACTGGGGACGAATGTTAAACGCTGAGCTCTCACAGCCATATAATAAATCTCAATCCCATGAGAAATCTTTATCATTTAGCAAGTACTCCTTGGGAAAATGGGACTTGTTTAAAGCTTGTATGAAGAGGGAGCTTCTTCTCATGAACCGAAACTCATTCATCTATATATTCAAAACTGTACAGCTTACAATCACTGCAATTATAACAATGACCGTCTTCTTACGCACTCAGCTGACTGTGGACTTAATTGGAGCAAACTATTTATTAGGTTCACTGTACTATACTCTTGTCCGCCTCATGACTAATGGAGTTGCTGAGTTGATCATGACAATTACAAGACTTCCTGTTGTTTATAAGCAGAAGGCGTTCTATCTATATCCAGCTTGGGCTTACTGTCTTCCATCTTGCATTATAAAGATTCCTTTTTCAGTTCTTGATTCTATTGTTTGGACATCAGTAACATATTATGTTATAGGCTACAGCCCTGAAATAACAAGGTTCTTGCGCATGTTTATTTTGCTTGTCACTCTGCACATGTCATCAACCTCTATGTGTCGTTTCCTCGCCTCAGTTTTCAAAACTGATGTTGCAGCTACAACTGTCGGTTCCCTGGTCTTAGTACTCATGTTCTTGTTTGGAGGCTTTATTCTTCCAAGACCATCGTTACCAAAGTGGTTGAGGTGGGCCTTCTGGCTTTCTCCCATGACATATGGGGAAATAGGAATAACACTAAATGAATTTCTCGCCCCTCGCTGGGAGAAGATCCAAAATGGTAACAATGTTACCATAGGAAGGGAGGTTCTTAAGAGTCATGGTTTAGATTTTGATGGCAACTTCTTCTGGATATCAGTTGGAGCCCTACTTGGTTTCGCAGTAGTATTTGATATTGGATTTATCTTAGCATTAACTTACTTAAAAGAGCCTAAGCCATCTCGAGCTATAGTTTCAAAGAAGAAGCTCTCTCAGCTAAGGGGAGGAGACGAAAGCAATAATGTGGACCTAAAAAATAAGTCGGTTACAGTTGATATTAGCAAAACATCAAAGCAAACTCAAAGTGCAGGAAAAATGGTCTTGCCGTTTGAGCCACTGACAATAGCATTTAAGGATGTCCAGTATTTTGTTGAAACTCCTCCGGAGATGAGAAAACATGGTTCCGATGAGAAAAGACTACAATTGCTCCGTGATGTCACAGGTGCCTTCAGGCCAGGAGTTCTTACTGCATTGATGGGAGTCAGTGGAGCAGGGAAAACAACTCTGATGGATGTCCTTTCAGGAAGAAAAACTGGTGGTACCATTGAAGGAGATATAAGAATTGGAGGATATCCCAAAGTGCAGAAGACATTTGCAAGAGTTTCAGGTTACTGTGAACAGAATGACATACATTCTCCATATATAACAGTTGAAGAATCTGTCAGATTCTCTGCTTGGTTGCGTTTGCCAATGGAGGTTGATTCAGCCACAAAAGGCAAATTTGTGGAAGAAGTCCTTGAAACAATTGAACTTGATGATATAAAAGATTCTTTAGTTGGCATCCCTGGCCTAAGTGGCTTATCTACCGAACAGCGCAAAAGGCTAACCATTGCAGTGGAGCTTGTTTCGAACCCATCAATAATATTCATGGATGAACCTACATCAGGTTTGGACGCCCGAGCAGCAGCGGTTGTTATACGTGCAGTGAAAAATGTCGTTGGGACGGGCAGGACCACAGTTTGCACCATCCACCAACCAAGCATTGACATATTTGAGACATTTGATGAGTTGATTCTAATGAAATCTGGAGGACAGATTATTTATAATGGAATGCTAGGCTATCATTCAAGCAGACTAATTGAATATTTCCAGGGTATACCTGGAGTTCCAAAGATCAAGGACAATTACAATCCTGCAACCTGGATGATGGAAGCTACTTCTGCATCAGTAGAAGAAGAACTTCAAGTAGATTTTGCAAAAATCTATAAAGAATCAAACCTTTACTGGGAAACCCTTGATTTGGTGAATCTTTTAAGTGAACCAGCGCCAAGTTCGACAGACTTGCACTTTTCAACTCCCTTCGCACAAAATAACTTGGGGCAGTTTATGGCATGCCTATGGAAGCAACACTTGTCCTATTGGAGAAGTCCAGAGTACAACTTAACACGTTTCATATTCATGGTTGTTGCAGCAGTAATATTTGGGGCCGTATTTTGGCAGAAAGGGAATGAAATAAACAATCAGCAGGATTTGTTCAATGTTTTTGGATCAATGTACATTGCTGTAATATTCTTGGGCATAAATTATTGTTCAACCATTCTACCTTATGTGGCAACTGAGCGCGCTGTCTTGTATCGAGAAAAATTTGCTGGAATGTATTCTTCCATGGCTTATTCATTTGCACAGGTGGCCATTGAAATACCATATATCTTAGTGCAAGCAATTTTATATGTGTCTATCACATATCCAATGATAGGTTTCTATTGGTCAGCTCCGAAATTCTTTTGGTACTTCTACACCACATTCTGCACATTTTTGTACTTTGTGTATCTAGGAATGCTGATAACATCGATAAGTGCAAATCTCGATCTAGCTTCTGTATTGTCAACTGCAGTCTACACCATATTCAATCTCTTTTCTGGATTTCTCATGCCAGGACCGAAAATTCCTAAATGGTGGGTGTGGTGCTACTGGATATGCCCTACAGCTTGGTCCTTGAATGGCCTCCTGACTTCACAATATGGAGACTTAGACAAGGAGATACTCATATTTGGGGAGCAAAAATCAGTTGGTTCCTTTTTAAAAGATTACTATGGGTTCAGACATGACAGACTAAGTGTTGTGGCTGTGGTGCTCATTGCTTATCCAATTATCTATGCCTCTCTCTTTGCCTATTGCATAGGTAAAGTGAATTACCAAAGAAGATAG 4407 0.4089 MELTPRSLTPRSLTPRSLTPRSLTPRSITPLSLTPRALTPRGITQGHGFTFDRDADSFVEEDRELQSKWAAIEKLPTFKRIQTSFVDVTQEEGVGTSKEADGRRVIDVTKLGAVEKRLFIDKLIRHIENDNLQLLQKLRERMDRVNVKLPTVEVKYKNLNVEAEYEVVQGKPLPTLWNSFSSFLSGFMKTISCTSQGASISILNDVSGIIKPARLTLLLGPPGCGKTTLLLALAGKLEQSLKVSGEISYNGHKLDEFVPQKTSAYISQYDLHIPEMTVRETIDFSARCQGVGSRADILAELNRREEEEGVIPDPDIDTYMKAIAVEGQSENLQTEYVLKILGLDMCADILIGDALERGISGGQKKRLTTGEMIVGPIKALFMDEISTGLDSSTTFQIVTCLQQLAHLTDSTAVLSLLQPAPETFELFDDLILMAEGKIVYHGPCHQAIQFFRDCGFWCPERKGVADFLQEVISKKDQRQYWYRTDIPYTYVSVDEFAEIFKTSYWGRMLNAELSQPYNKSQSHEKSLSFSKYSLGKWDLFKACMKRELLLMNRNSFIYIFKTVQLTITAIITMTVFLRTQLTVDLIGANYLLGSLYYTLVRLMTNGVAELIMTITRLPVVYKQKAFYLYPAWAYCLPSCIIKIPFSVLDSIVWTSVTYYVIGYSPEITRFLRMFILLVTLHMSSTSMCRFLASVFKTDVAATTVGSLVLVLMFLFGGFILPRPSLPKWLRWAFWLSPMTYGEIGITLNEFLAPRWEKIQNGNNVTIGREVLKSHGLDFDGNFFWISVGALLGFAVVFDIGFILALTYLKEPKPSRAIVSKKKLSQLRGGDESNNVDLKNKSVTVDISKTSKQTQSAGKMVLPFEPLTIAFKDVQYFVETPPEMRKHGSDEKRLQLLRDVTGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGTIEGDIRIGGYPKVQKTFARVSGYCEQNDIHSPYITVEESVRFSAWLRLPMEVDSATKGKFVEEVLETIELDDIKDSLVGIPGLSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAVVIRAVKNVVGTGRTTVCTIHQPSIDIFETFDELILMKSGGQIIYNGMLGYHSSRLIEYFQGIPGVPKIKDNYNPATWMMEATSASVEEELQVDFAKIYKESNLYWETLDLVNLLSEPAPSSTDLHFSTPFAQNNLGQFMACLWKQHLSYWRSPEYNLTRFIFMVVAAVIFGAVFWQKGNEINNQQDLFNVFGSMYIAVIFLGINYCSTILPYVATERAVLYREKFAGMYSSMAYSFAQVAIEIPYILVQAILYVSITYPMIGFYWSAPKFFWYFYTTFCTFLYFVYLGMLITSISANLDLASVLSTAVYTIFNLFSGFLMPGPKIPKWWVWCYWICPTAWSLNGLLTSQYGDLDKEILIFGEQKSVGSFLKDYYGFRHDRLSVVAVVLIAYPIIYASLFAYCIGKVNYQRR* 1469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1415 1468 Pfam ABC-2 type transporter 539 750 IPR013525 GO:0016020|GO:0140359
Lja4g1415 1468 Pfam ABC-2 type transporter 1194 1406 IPR013525 GO:0016020|GO:0140359
Lja4g1415 1468 MobiDBLite consensus disorder prediction 1 47 - -
Lja4g1415 1468 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 868 1120 IPR003439 GO:0005524
Lja4g1415 1468 Pfam Plant PDR ABC transporter associated 755 818 IPR013581 -
Lja4g1415 1468 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 38 1468 - -
Lja4g1415 1468 CDD ABCG_PDR_domain2 865 1103 IPR034003 -
Lja4g1415 1468 Pfam ABC transporter 896 1048 IPR003439 GO:0005524
Lja4g1415 1468 Pfam ABC-transporter N-terminal 129 178 IPR029481 -
Lja4g1415 1468 Gene3D - 882 1110 IPR027417 -
Lja4g1415 1468 Gene3D - 188 452 IPR027417 -
Lja4g1415 1468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 460 IPR027417 -
Lja4g1415 1468 Pfam ABC transporter 203 385 IPR003439 GO:0005524
Lja4g1415 1468 PANTHER ATP-BINDING CASSETTE TRANSPORTER 38 1468 - -
Lja4g1415 1468 Pfam ABC-2 type transporter 418 492 IPR043926 GO:0140359
Lja4g1415 1468 Pfam ABC-2 type transporter 1077 1149 IPR043926 GO:0140359
Lja4g1415 1468 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 188 460 IPR003439 GO:0005524
Lja4g1415 1468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 893 1101 IPR027417 -
Lja4g1415 1468 MobiDBLite consensus disorder prediction 1 34 - -
Lja4g1415 1468 SMART AAA_5 905 1097 IPR003593 -
Lja4g1415 1468 SMART AAA_5 212 437 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1415 Lja-Chr4 12811000 12820992 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1415 893 1080 Calmodulin-binding Proteins AT2G36910 28.079 4.85e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1415 K08711 - gmx:100779615 2471.04