Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1408 ATGCAAGATACTTTGCAATTATCAGAGGAAAGAGAATACCCTTTACTGGATTTGGGGCATAAAACATTGTCTTGGGAATTTCCACACTTTGGAGGCTTGGTGGATAAGGATTACAAATTGCTGGATCAGTATTCTTATTTGATCGAAAAGCACTTCGTTACTTTCGCAAGGATGGCTGGTAGTGTGGATGTCTTGCATTGTTACTATGCCCACGGTGAGGATAATGAAAACTTTCAACGAAGAAGTTATTGGATGCTTGATGAGCAGCTAGAGCACATTGTCCTGGTGCATTATCGAAAAGTTAAAGAGGGCTGCAAGTCTGGCATCACAAAATTGCCTGTAGTTCCAGTAACCTTGGTTGGTAGCTCTCGAAGTGGTTCAGCGCCTTTCTCTAACAAAATCAGCTCACCAACATGTGTTGTTCAAACATCTTTGACACCAACTGCAAATAAAGATGATCTGAATGGACAAGCTTCGGAGTATGAGGAAGACAACTCACTGAATGGTCCTCATGCTCAACCTATCAGCAATCCCATGCCACACAGTGCACCACAGCTTGCAGATGAAGCCACTGGGTTACTGAGGAATCCCATTATGTCATCATGGACATCTTCTCTCCCTAACTTTTCTCATGGGAATGGCTTGTCTCCCTTGGGATTAATTCAGAATTCTGGCCTAAATACTGTTTGTATCCATGACAAACAACTTCATGTTGAAGGATCGATTGATGGCCCGGAAGTGGACTTCACTGTTCTTAAACTAGGCAATTCAAGGTTAGATGCAGTTTGCAAAATGCAAGATCACATGATTTCCAAAGATAGGCTCATCACCGACGTGTATATCCAGCCTGTTACAGGAGCTTCAAAAACTGTTAATCAGGAACAACTATTTAGTATCCATGACTTTTCTCCAGATTGGGCATATGCTGGTGTTAGAACAAAGGTAGAAGAAACTGTGATTGTGCTAGTCAAATTAGGTGCGGCCCCAGGTGCCGTTCAGGATCCAACATCAGCATTTCCTCGAGGACATACAGCAGCTGATTTAGCTTCAAGTAGAGGACATAAAGGCATTGCCGGGTATTTGGCTGAGGCAGATCTGAAAAGTCAATTATCTATATTAAGTACTGTCAATGAAAATGAAATGTACAACATCGTCACAACCACAGAAGCTGACAATGCTTTTGAGACTGCAGAAGGTGACTCGCCTAATATGACAATGGATGAGCAGCATTGTATGAAAGAGTCACTCGTTGCTTTACGAAAATCAGCTCATGCAGCTGCTTCAATCCAAGCAGCCTTTAGAGCAAGATCATTCTGTCAGAGACAATTAGCCAAAAGTAGCAGTGATAATTCTGAAGCAGTACTTGACCTGGTTGCTGATTCTTTGAACAAGGTTCAGAATATGGGTCACTTTGAGGATTATTTACATTTTGCAGCTTTAAGGATTCAAAAGAGATATCATGGGTGGAAAGGAAGAAAAGATTTCTTGAAAATACGCAACCGCATCATAAAAATTCAGGCTCATATTAGAGGACACCAAGTCCGCAAGCAGTACAAAAAAGTTGTTTGGTCTGTTAGCATTGTGGAAAAGGCAATACTGCGCTGGAGACGGAAAGGAGCTGGTCTACGAGGATTCCGGATTGGGCAGCCATTTGGCATCGTGGGAAAAGATGCTGAGAAAAGTGATGAGTATGATTTTCTTAGCATTGGGCGGAGACAGAAATCAGATGATGTAAAGAAAGCTCTGGATAGAGTGAAGTCCATGGTCCGAAGCCCGGAGGCACGCGATCAATATATGAGGCTTATCATGAAATATCAGAATTCTAAGGTTGATGATGGTGGAAGCAGCCCATCACAACATGTTGATAGAGTCTAA 1875 0.4229 MQDTLQLSEEREYPLLDLGHKTLSWEFPHFGGLVDKDYKLLDQYSYLIEKHFVTFARMAGSVDVLHCYYAHGEDNENFQRRSYWMLDEQLEHIVLVHYRKVKEGCKSGITKLPVVPVTLVGSSRSGSAPFSNKISSPTCVVQTSLTPTANKDDLNGQASEYEEDNSLNGPHAQPISNPMPHSAPQLADEATGLLRNPIMSSWTSSLPNFSHGNGLSPLGLIQNSGLNTVCIHDKQLHVEGSIDGPEVDFTVLKLGNSRLDAVCKMQDHMISKDRLITDVYIQPVTGASKTVNQEQLFSIHDFSPDWAYAGVRTKVEETVIVLVKLGAAPGAVQDPTSAFPRGHTAADLASSRGHKGIAGYLAEADLKSQLSILSTVNENEMYNIVTTTEADNAFETAEGDSPNMTMDEQHCMKESLVALRKSAHAAASIQAAFRARSFCQRQLAKSSSDNSEAVLDLVADSLNKVQNMGHFEDYLHFAALRIQKRYHGWKGRKDFLKIRNRIIKIQAHIRGHQVRKQYKKVVWSVSIVEKAILRWRRKGAGLRGFRIGQPFGIVGKDAEKSDEYDFLSIGRRQKSDDVKKALDRVKSMVRSPEARDQYMRLIMKYQNSKVDDGGSSPSQHVDRV* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1408 624 ProSiteProfiles CG-1 DNA-binding domain profile. 1 107 IPR005559 GO:0003677
Lja4g1408 624 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 59 315 - -
Lja4g1408 624 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 316 600 - -
Lja4g1408 624 SMART CG_1_2 40 102 IPR005559 GO:0003677
Lja4g1408 624 Gene3D - 473 522 - -
Lja4g1408 624 SMART iq_5 497 519 IPR000048 GO:0005515
Lja4g1408 624 SMART iq_5 421 445 IPR000048 GO:0005515
Lja4g1408 624 SMART iq_5 474 496 IPR000048 GO:0005515
Lja4g1408 624 MobiDBLite consensus disorder prediction 145 180 - -
Lja4g1408 624 ProSiteProfiles IQ motif profile. 475 504 IPR000048 GO:0005515
Lja4g1408 624 Pfam IQ calmodulin-binding motif 500 519 IPR000048 GO:0005515
Lja4g1408 624 MobiDBLite consensus disorder prediction 145 183 - -
Lja4g1408 624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 470 525 IPR027417 -
Lja4g1408 624 Pfam CG-1 domain 60 100 IPR005559 GO:0003677
Lja4g1408 624 ProSiteProfiles IQ motif profile. 498 526 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1408 Lja-Chr4 12713099 12718678 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1408 278 618 CAMTA Transcription Factor Family AT5G09410 42.936 3.09e-74 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Lja4g1408 CG-1 3.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1408 K21596 - gmx:100818336 487.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1408 4 12713099 12718678 Lja4g1408 4 12713099 12718678 ECH