Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1400 ATGATGGCGGAAGCGGAAATTATCTGTCAACAGAGCATTCCCATGTTGGAGGTCAAGTATCACCTCTGCGTCGCACAAGAACACAACGTCAAGGTCGAGGTTTCACCCACCTCACCCCCTCAATCTGTTCAGATCTTCAGCCAAGCTGTGAGTTGCTCTGAGATCATTAAAGAATCAATTTTGGAGATCCCTAAAGCTAAGTTTATCCCGAATGTGCGATCTGGTAGCTATGCTGAAATTGGGCCGCGGGGATCTATGGATGATGAACACATTCAGATAGATGATCTAGCTGGGCACCTTGGATTTGTGTTCAAGTGCCCAATGCCGAGTGCGTTTTATGGAGTTTTTGATGGGCATGGAGGGCCTGAGGCAGCTGCTTTTGTTAAGAGGAATGCTATGAGATTGTTTTTTGAAGATGTTGATATGCTGCAATCATACGATACTGATGCACTTTTCCTGAAGGAGTTGGAGGATTCTCATCGGAGAGCTTTTTTACGGGCTGATCTTGCCTTGGCTAATGAAGAAAGTGTTAATAGCTCATGTGGGACTACAGCATTGACTGCCCTTGTACTTGGAAGGCATTTGCTCGTTGCTAATGCTGGTGACTGTCGAGCAGTTCTTTGTAGGAGAGGCAAAGCTGTTGACATGTCCCATGATCACAGGCCGAGCTATTTACCTGAGCGTAGGAGAGTGGAGGAGTTGGGTGGCTTTATTGATGATGGATATCTCAATGGTTATCTTTCTGTAACTCGTGCCTTGGGGGATTGGGACTTTAAATTGCCAATTGGCGCTGCATCCCCTCTTATTGCCGAGCCTGATGTTCAACTGATTACTTTGACAGAAGATGATGAGTTCTTGATCATTGGTTGTGATGGGATTTGGGATGTAATGTCTAGCCAAGTTGCAGTTAGTCTTGTTCGACGCGGATTAAGAAGGCATGATGATCCCCAGCAATGTGCCAGAGAACTAGTCAAGGAAGCATTGCGCCTAAACACATCGGATAATCTCACTGTGATTGTTATATGTTTGTCCTCCATTGAAAGCACTGTTGAATCATGTCCACCCCAAAGGCGAAGATTCAAAGCTTGCAGTCTGTCTGAAGAGGCCCGCAATAGATTAAAGAGCTTGATGGAGGGAAATTAA 1143 0.4549 MMAEAEIICQQSIPMLEVKYHLCVAQEHNVKVEVSPTSPPQSVQIFSQAVSCSEIIKESILEIPKAKFIPNVRSGSYAEIGPRGSMDDEHIQIDDLAGHLGFVFKCPMPSAFYGVFDGHGGPEAAAFVKRNAMRLFFEDVDMLQSYDTDALFLKELEDSHRRAFLRADLALANEESVNSSCGTTALTALVLGRHLLVANAGDCRAVLCRRGKAVDMSHDHRPSYLPERRRVEELGGFIDDGYLNGYLSVTRALGDWDFKLPIGAASPLIAEPDVQLITLTEDDEFLIIGCDGIWDVMSSQVAVSLVRRGLRRHDDPQQCARELVKEALRLNTSDNLTVIVICLSSIESTVESCPPQRRRFKACSLSEEARNRLKSLMEGN* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1400 380 SMART PP2C_4 63 341 IPR001932 -
Lja4g1400 380 CDD PP2Cc 72 343 IPR001932 -
Lja4g1400 380 Gene3D - 63 349 IPR036457 -
Lja4g1400 380 SUPERFAMILY PP2C-like 68 344 IPR036457 -
Lja4g1400 380 Pfam Protein phosphatase 2C 83 335 IPR001932 -
Lja4g1400 380 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 1 367 - -
Lja4g1400 380 SMART PP2C_SIG_2 88 343 IPR001932 -
Lja4g1400 380 ProSitePatterns PPM-type phosphatase domain signature. 112 120 IPR000222 GO:0043169
Lja4g1400 380 ProSiteProfiles PPM-type phosphatase domain profile. 73 343 IPR001932 -
Lja4g1400 380 PANTHER PROTEIN PHOSPHATASE 2C 1 367 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1400 Lja-Chr4 12575992 12578101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1400 1 379 PP2C-type Phosphatase Gene Family AT1G48040 56.959 2.43e-145 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1400 K14803 - gmx:100775577 670.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1400 4 12575992 12578101 Lja4g1400 4 12575992 12578101 ECH
Lja4g1400 4 12575992 12578101 Lja6g2749 6 56513590 56515776 PCT