Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1397 ATGGATGTAAAAGGAAGAGGAGGAAGCAACAACAACACCGATACAACAATCATGAGTGAGGATGAGATGGACCTCCGAAGAGGCCCTTGGACTGCGGATGAGGACCTCACCCTCATGAATTACGTTGCTACTCATGGTGAAGGTCGTTGGAACACCCTCGCCCACTCAGCCGGCCTCAAGAGAACTGGGAAGAGTTGCAGATTGAGGTGGCTGAACTATCTCCGTCCTGATGTTCGACGAGGAAACATCACACTTGAAGAACAACTCTTGATTCTCGATCTTCATTCTCGCTGGGGAAATAGGTGGTCAAAAATTGCTCAGTATTTACCGGGAAGAACCGATAATGAGATCAAGAACTATTGGAGAACCCGAGTACAAAAGCTTGCAAAACAACTAAAATGTGACGTGAATAGCAAGCAATTCAAGGACACCATGCGCTACCTTTGGATGCCAAGGCTTGTAGAACGCATCCAAGCAGCCGCCACCGCAACCGCCACGACAACCAATTCAAGCTCTCCAACTCTATCCACCATCACCACCACCACCACTGTCACCGCCACTAACACCCACGACGACAACATGAAAATGGGGTTAAGTACTCCTCCAGCTTCATCTTCATCAGACTCGTTTGGGACTCAGGTTTCAGAATTGAGTGATTATTATCAACCCCCTCAACTTGGCTCTGATTATTGCATCAGAAGCCCCTCTGCAGGGTTGTTCTTCCCTCAGGGAATGGATTTTCAAACCACCGTGGTGGAGCCAAACACGCCGTGGATGATGATCCAAAGCGGTGGGGACTCTTCCGACAGCTTTTGGAACGCGGAAAACATGTTGCTTTTACAGCAGCAGCTCATGAATTAG 861 0.4866 MDVKGRGGSNNNTDTTIMSEDEMDLRRGPWTADEDLTLMNYVATHGEGRWNTLAHSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILDLHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKLAKQLKCDVNSKQFKDTMRYLWMPRLVERIQAAATATATTTNSSSPTLSTITTTTTVTATNTHDDNMKMGLSTPPASSSSDSFGTQVSELSDYYQPPQLGSDYCIRSPSAGLFFPQGMDFQTTVVEPNTPWMMIQSGGDSSDSFWNAENMLLLQQQLMN* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1397 286 MobiDBLite consensus disorder prediction 1 20 - -
Lja4g1397 286 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Lja4g1397 286 Pfam Myb-like DNA-binding domain 80 123 IPR001005 -
Lja4g1397 286 SMART sant 26 76 IPR001005 -
Lja4g1397 286 SMART sant 79 127 IPR001005 -
Lja4g1397 286 Gene3D - 84 147 - -
Lja4g1397 286 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Lja4g1397 286 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 203 283 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lja4g1397 286 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 201 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lja4g1397 286 MobiDBLite consensus disorder prediction 1 18 - -
Lja4g1397 286 PANTHER MYB TRANSCRIPTION FACTOR 203 283 - -
Lja4g1397 286 PANTHER MYB TRANSCRIPTION FACTOR 1 201 - -
Lja4g1397 286 CDD SANT 84 123 IPR001005 -
Lja4g1397 286 Gene3D - 27 79 - -
Lja4g1397 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Lja4g1397 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Lja4g1397 286 SUPERFAMILY Homeodomain-like 24 121 IPR009057 -
Lja4g1397 286 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Lja4g1397 286 CDD SANT 29 74 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1397 Lja-Chr4 12537309 12539586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1397 1 158 MYB Transcription Factor Family AT3G06490 83.544 2.86e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja4g1397 Myb_DNA-binding 8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1397 K09422 - gmx:100791349 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1397 4 12537309 12539586 Lja4g1397 4 12537309 12539586 ECH