Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1392 ATGTTTTGGCCAAAGATATTCATTGTAGCAGCAAATATGAATATGAATGTTATTCTTTCTGTCCACTTCCTATGTTTCTTTCTTTTAACTACATCATTCATTAAAACATATGGAATAAATGTTGGAGCCAATGAATCTGATAGAATAGTTGATCTTCCTGGGGTACCTTCAAGCCCCTCAGTCTCACACTTTTCAGGTTACATCACGGTCAATGAAGACCATGGGAGGGCCCTTTTCTATTGGTTTTTCGAAGCTCAATCCGAACCGTCCAAGAAGCCTCTCCTTCTCTGGCTCAATGGAGGACCTGGATGCTCCTCTGTTGGGTATGGTGCAGCTATTGAGATAGGGCCTCTTTTAGTCAACAAAAATGGTGAAGGACTAAATTTCAACCCATACTCATGGAATCAAGAAGCAAATTTGTTATTTGTAGAGTCCCCTGTTGGAGTTGGTTTTTCTTACACCAACACCTCTTCTGATCTCACCATATTAGAGGATAATTTTGTTGCTGAGGATGCCTACAATTTCTTGGTGAATTGGCTACAAAGATTCCCACAGTTCAAATCCAGGGGCTTTTTTATTTCAGGAGAAAGCTATGGTGGACACTACATTCCTCAGCTTGCAGAGTTAATCTTTGATAGGAACAAAGATAAAAATAAATACCCCTTTATCAATCTTAAAGGCTTTATAGTAGGGAATCCAGAAACTGAAGATTATTATGACTATAAAGGTTTGCTGGAATATGCATGGAGCCATGCAGTTATATCAGATCAGCAATATGACAAAGCAAAACAAGTGTGTGATTTCAAACAATTTCAATGGTCTAATGAATGCAATAAGGCCATGAATGAAGTCTTTCAAGATTACTCAGAAATTGACATATACAACATTTATGCCCCGAAATGTCGTCTAAATAGCACATCCGCAATTGCTAGTGAGGGCCTTGAACAACTTACAAAGGGGAGGAATGATTATAGAATGAAGAGGAAGAGAATATTTGGGGGCTATGATCCGTGTTATTCAACATATGCAGAAAAATACTTCAATAGGATAGATGTTCAATCATCTTTTCATGTAAATACTGAAAGAGGAAACACTAATATCACATGGGAGGTTTGCAATAATTCCATATTGCAGACTTACAACTTCTCTGTCTTCTCCATCCTACCCATTTACACCAAACTCATCAAGGGTGGGCTTAAAATATGGATTTATAGTGGAGATGCAGATGGCAGAGTACCAGTGATAGGGACACGATACTGCGTTGAGGCTCTTGGATTGCCTCTTAAGTCAAGTTGGCGCTCTTGGTACCTCGATAATCAGGTTGGAGGAAGGATAGTGGAGTATGAGGGTTTGACATACGTTACAGTGAGAGGAGCTGGTCATTTGGTGCCTCTAAACAAGCCCAAGGAGGCTCTTTCTCTTATTCATTCTTTCCTGGCCGGCGACCGCCTTCCTACTCGTCGTTGA 1467 0.4001 MFWPKIFIVAANMNMNVILSVHFLCFFLLTTSFIKTYGINVGANESDRIVDLPGVPSSPSVSHFSGYITVNEDHGRALFYWFFEAQSEPSKKPLLLWLNGGPGCSSVGYGAAIEIGPLLVNKNGEGLNFNPYSWNQEANLLFVESPVGVGFSYTNTSSDLTILEDNFVAEDAYNFLVNWLQRFPQFKSRGFFISGESYGGHYIPQLAELIFDRNKDKNKYPFINLKGFIVGNPETEDYYDYKGLLEYAWSHAVISDQQYDKAKQVCDFKQFQWSNECNKAMNEVFQDYSEIDIYNIYAPKCRLNSTSAIASEGLEQLTKGRNDYRMKRKRIFGGYDPCYSTYAEKYFNRIDVQSSFHVNTERGNTNITWEVCNNSILQTYNFSVFSILPIYTKLIKGGLKIWIYSGDADGRVPVIGTRYCVEALGLPLKSSWRSWYLDNQVGGRIVEYEGLTYVTVRGAGHLVPLNKPKEALSLIHSFLAGDRLPTRR* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1392 488 Pfam Serine carboxypeptidase 53 480 IPR001563 GO:0004185|GO:0006508
Lja4g1392 488 ProSitePatterns Serine carboxypeptidases, histidine active site. 451 468 IPR033124 GO:0004185
Lja4g1392 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 142 IPR001563 GO:0004185|GO:0006508
Lja4g1392 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 143 153 IPR001563 GO:0004185|GO:0006508
Lja4g1392 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 179 204 IPR001563 GO:0004185|GO:0006508
Lja4g1392 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 451 464 IPR001563 GO:0004185|GO:0006508
Lja4g1392 488 ProSitePatterns Serine carboxypeptidases, serine active site. 193 200 IPR018202 GO:0004185
Lja4g1392 488 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 26 10 486 - -
Lja4g1392 488 Gene3D alpha/beta hydrolase 43 303 IPR029058 -
Lja4g1392 488 Gene3D - 338 376 - -
Lja4g1392 488 Gene3D - 387 481 - -
Lja4g1392 488 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 10 486 IPR001563 GO:0004185|GO:0006508
Lja4g1392 488 SUPERFAMILY alpha/beta-Hydrolases 45 484 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1392 Lja-Chr4 12455939 12459484 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1392 369 484 Calmodulin-binding Proteins AT2G22960 31.624 1.91e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1392 K16297 - gmx:100792930 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1392 4 12455939 12459484 Lja4g1392 4 12455939 12459484 ECH