Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1385 ATGACTCTAATCATGTTTCTTCTCAGTGTTGTATCACAAATACTAGTGTACATGACCCCAGAAACTACAAATGCTCTTGCTTTGAGTTCAGAGACTGATAAGCTTGCTTTGCTTGCATTCAAAGAAAAGCTTACAAATGGCGTGCCTAATTCTCTGCCATCATGGAATGAGTCTTTGCATTTCTGTGAATGGCAGGGTGTTACATGCGGCCATCGCCACATGAGAGTCATTTCCTTGCATTTAGAAAATCAAACCTGGGGTCATAGTGGTTCTCTTGGACCAGCCTTGGGAAATCTAACCTTCCTCAGAAACCTCATACTTACAAACCTCAACCTACATGGTGAAATTCCCAGAGAAGTTGGTCGTTTGAAACGGCTGCAGCTACTTGACTTAAGCATGAACAATCTTCAGGGAGAGGTTCCTGTGGAGCTTACTAACTGCTCAAACCTTCAGAAAATTAGCTTTTTGTTCAATAAGCTCAGTGGAAAAGTTCCCTCATGGTTTGGATCTATGAGGCAGCTCACTATGCTGCTTCTTGGTGTTAACAATCTAGTTGGTACTATCCCACCTTCCTTGGGAAATCTTTCATCACTCCAGAACCTATTACTTGCCAGAAATGGTTTGGAAGGTAGCATACCTTATGAATTGGGTAGGTTGTCAAGTTTGAAAATCCTGAATCTTGGTTCAAATAGTTTATCAGGTATGGTTCCTCAATCACTTTACAACCTTTCAAACATTCAAGCTTTTACTCTAGGGGAAAACCAATTACATGGCCCTCTTCCATCAGATATACAACTTGCCTTTCCCAATCTTCAATTATTCTTGGTTGGGTCGAATCACTTCACTGGAACTTTCCCGTCTTCCATATCCAACCTTACCGAATTGCAATGGCTTGACATTGACTCAAATGCTTTAAAAGGGCCAATACCTCATTTGGGAAGACTTAATAAACTTGAGAGGTTTAACATTGGTGGTAATAGTCTTGGGAGTGAAAGAGCTCACGATTTGGATTTTGTTTCCTCATTAACCAATTGTACTCAACTGGAAGTGCTTAATTTGAGTGGAAATAGATTTGGTGGTGTGTTGTCAAATCTTATAGGCAACTTTTCTACCCAACTCAGAGAGCTTACCATGGATCAAAATCAAATTTCCGGGGTCATACCTGAAGAAATTGGAAAACTGGTACATTTAACTTCCTTTACTATCATAGAGAATGTGCTTGAGGGGACAATTCCACATTCAATTGGAAAGCTTAAGAATCTAGTTAGATTGGCCTTGCAAGAAAACAAATTATCTGGTAACATTCCTCTTGTTATTGGAAATCTTACAAGGTTATCTGAACTATATCTTCACACCAATAAATTTGAAGGAACCATTCCATCTACCCTCAGATACTGCACTCAGTTACAGTCATTTGGTGTTGCTGAGAACCACCTAAATGGTGATATTCCTAATCAAACATTTGGCTATCTACAAGGTTTAGTAGAGCTTGACTTGTCCAACAACTCACTCACTGGTCTCCTTCCTTCTGAGTTAGGTAACTTGAAGCTTCTTTCAATATTACATCTACACATAAACAAGTTGTCAGGTGAAATTCCTATGGCACTGGGTGCTTGTTTGGCATTAACAGAGCTCGTGCTGGAGAGGAACTTTTTCCATGGAAGTATACCTTCCTTCTTAGGCTCTTTTAGATCCCTCGAATTCTTAGACTTTTCACACAACAACTTCTCAAGCACAATACCCCATGAACTAGAAAACCTGACATTGTTGAATAATTTGGACTTTTCTTTCAACCATCTCTATGGTGAGGTTCCCACAGGAGGGGTCTTTAATAATGTCATTGCAATTTCACTCCTAGGAAATAAGGATCTATGTGGGGGGATACCTCAACTAAAGCTTCCTGCATGCTTGAGGCCACACAAGAGGCATCTTAAAAAGAAAGTTATCCTCATCATTGTAAGTGGCGGGGTTTTGATGTGTTTCATTCTACTTATCAGTGTCTATCATCTCAAGAAAGCTCCCAAAAGCCCATCTTCTCTACCATCTCTTCAAGTTCAAGATAGGTTCTTGAAAGTTTCTTATGGAGAGCTACATGAATCAACCAATGGGTTTTCTTCATCCAATTTATTAGGCACTGGAAGCTTTGGTTCTGTATACAAAGGATCTCTTCTCCATTTTGAAAGACCCGTTGCAATAAAGATACTGAATCTCGAAACAACCGGGGCATCAAAGAGCTTCACGGCAGAATGCAAGTCTCTGGGAAAGCTGAAGCACAGGAATCTTCTCAATATCCTCACTTGTTGTTCAAGCACTGATTATAAAGGTGAAGATTTCAAGGCTATTGTTTTTGAGTTCATGCCTAATGGGAGCCTAGAAAGCATGTTGCACAGCAATGAACAAGTGGAGTCTAGAAATCAAAGTCTCAACCTTACACAAATGTTGAACATTTCTCTTGATGTAGCTCATGCATTGGATTATCTTCACCATGATTCCGAGCTAGCTGTAGTACATTGTGACATAAAGCCAAGCAATATTCTTCTAGACGATGACATTGTTGCCCACTTGGGAGACTTTGGGTTAGCAAGGCTCCTTCATGAAACCACGGGGGACCCTAGTAGACATCAAGTTAGCTCTTCTGTGATTAAAGGAACCATTGGATATATTCCCCCAGAGTATGGAGAGGGTGGTCCAGTATCACCACAAGGAGACATCTACAGCTATGGGATTCTTCTGTTGGAGATGCTAACTGGAAAGAAACCAACAAGTAGCATGTTTTGTGAGGATCTAAGCCTTAACAAGCTGTGCATGATGGCAATCCCAGAAAGAATCAACGAGATAGTGAAACCAAGCTTGCTTATCCCATTTGCTGATGAACATAGAAGGGTGGTTAAAGACATCATTAGGGAGTGTTTAGTGTGGTTTGCTATGATTGGAGTTGCATGTTCTGCAGAATTACCTGCTCATCGAATGGCCATAGCAGATGTTATAGTCAAGTTGCATGCAATTAAAAAGAAGTTGCTCTGCCCTCGCTAG 3033 0.4055 MTLIMFLLSVVSQILVYMTPETTNALALSSETDKLALLAFKEKLTNGVPNSLPSWNESLHFCEWQGVTCGHRHMRVISLHLENQTWGHSGSLGPALGNLTFLRNLILTNLNLHGEIPREVGRLKRLQLLDLSMNNLQGEVPVELTNCSNLQKISFLFNKLSGKVPSWFGSMRQLTMLLLGVNNLVGTIPPSLGNLSSLQNLLLARNGLEGSIPYELGRLSSLKILNLGSNSLSGMVPQSLYNLSNIQAFTLGENQLHGPLPSDIQLAFPNLQLFLVGSNHFTGTFPSSISNLTELQWLDIDSNALKGPIPHLGRLNKLERFNIGGNSLGSERAHDLDFVSSLTNCTQLEVLNLSGNRFGGVLSNLIGNFSTQLRELTMDQNQISGVIPEEIGKLVHLTSFTIIENVLEGTIPHSIGKLKNLVRLALQENKLSGNIPLVIGNLTRLSELYLHTNKFEGTIPSTLRYCTQLQSFGVAENHLNGDIPNQTFGYLQGLVELDLSNNSLTGLLPSELGNLKLLSILHLHINKLSGEIPMALGACLALTELVLERNFFHGSIPSFLGSFRSLEFLDFSHNNFSSTIPHELENLTLLNNLDFSFNHLYGEVPTGGVFNNVIAISLLGNKDLCGGIPQLKLPACLRPHKRHLKKKVILIIVSGGVLMCFILLISVYHLKKAPKSPSSLPSLQVQDRFLKVSYGELHESTNGFSSSNLLGTGSFGSVYKGSLLHFERPVAIKILNLETTGASKSFTAECKSLGKLKHRNLLNILTCCSSTDYKGEDFKAIVFEFMPNGSLESMLHSNEQVESRNQSLNLTQMLNISLDVAHALDYLHHDSELAVVHCDIKPSNILLDDDIVAHLGDFGLARLLHETTGDPSRHQVSSSVIKGTIGYIPPEYGEGGPVSPQGDIYSYGILLLEMLTGKKPTSSMFCEDLSLNKLCMMAIPERINEIVKPSLLIPFADEHRRVVKDIIRECLVWFAMIGVACSAELPAHRMAIADVIVKLHAIKKKLLCPR* 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1385 1010 Gene3D Ribonuclease Inhibitor 29 311 IPR032675 -
Lja4g1385 1010 ProSitePatterns Protein kinases ATP-binding region signature. 710 733 IPR017441 GO:0005524
Lja4g1385 1010 Gene3D Phosphorylase Kinase; domain 1 667 785 - -
Lja4g1385 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 835 847 IPR008271 GO:0004672|GO:0006468
Lja4g1385 1010 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 27 1008 - -
Lja4g1385 1010 SUPERFAMILY L domain-like 30 328 - -
Lja4g1385 1010 SMART serkin_6 704 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1385 1010 Gene3D Ribonuclease Inhibitor 312 644 IPR032675 -
Lja4g1385 1010 Pfam Protein kinase domain 706 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1385 1010 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Lja4g1385 1010 ProSiteProfiles Protein kinase domain profile. 704 1003 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1385 1010 Gene3D Transferase(Phosphotransferase) domain 1 786 1007 - -
Lja4g1385 1010 SUPERFAMILY L domain-like 343 626 - -
Lja4g1385 1010 SMART LRR_typ_2 442 466 IPR003591 -
Lja4g1385 1010 SMART LRR_typ_2 123 147 IPR003591 -
Lja4g1385 1010 SMART LRR_typ_2 563 587 IPR003591 -
Lja4g1385 1010 SMART LRR_typ_2 491 514 IPR003591 -
Lja4g1385 1010 SMART LRR_typ_2 219 242 IPR003591 -
Lja4g1385 1010 SMART LRR_typ_2 171 195 IPR003591 -
Lja4g1385 1010 SMART LRR_typ_2 345 368 IPR003591 -
Lja4g1385 1010 SUPERFAMILY Protein kinase-like (PK-like) 689 973 IPR011009 -
Lja4g1385 1010 PANTHER LRR RECEPTOR-LIKE KINASE 27 1008 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1385 Lja-Chr4 12384713 12387840 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1385 27 1007 Receptor kinase-like Gene Family AT3G47570 43.300 0.0 773
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Lja4g1385 Pkinase 3.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1385 - - gmx:100777490 1321.61