Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1376 ATGAATTTCAACCACCGCACCCCCGCCGGTTTCCGCTCCGGCGGTGTCACTCACCACCACCGCGCCTTTGACAGCCCCCCGCGCCGCCCAATGGGCGGTGAGGCTCCTGGAGGTTTTGGATTCAACGGGAACCGGTCAATGGGCGGTGACGGTCCTGGTGATTTCGGATTCAATAGTAACCGGTTAATGGGCGCTGAGGGTTCTGGAGAATTTGGATTCAATGGTCACCAGCCACCGCCTCTGTCTGGTCAGAAACGAGGGTTTCCTTTCTCTTCTGGACGCGCCGGACCTTCACCCGGTGAGCATTCTCATTCCGATCGGTCTGATGGTGGAAATTTCGCCAAACTTTTTGTTGGATCTGTTCCTCGAACCGCCTGTGAAGAAGATATTCGCCCTTTGTTTGAGGAACATGGGAATGTGATTGAGGTTGCCTTAATCAAAGATAGAAAGACAGGACAGCATCAAGGTTGTTGTTTCATAAAATATGCTACCTCTGAAGAAGCTGATCAGGCAATTAGAGCATTGCATAATCAACTTACTCTTCCTGGAGGTATTGGTCCCATCCAAGTACGGTATGCTGATGGTGAACGGGAACGCCTTGGTGCTGTTGAGTACAAATTATTTGTGGGCTCTCTGAACAAACAGGCTCCAGTCAATGAAGTTGAGGAAATTTTCTCAAAATACGGGCGTGTTGAAGATGTTTATCTTATGCGTGATGAGAATAAGCAAAGTCGTGGATGTGGGTTTGTTAAATACTCAAATAGAGATATGGCGCTGGCGGCTATTAATGGACTTAACGGAATCTATACAATGAGAGGTTGTGATCAACCACTTATTGTCCGGTTTGCTGATCCTAAGAGACCTCGTCAAGGAGATTCCAGGGGTCCTGCATTTGGAGGTTCAGGATTTGGCCCCAGATTTGATGCGCCAGGCACAAGACTTCCATCCAAGGTTTCTGATCCTATGGGTGATCGGATGCCTCCCTCTAATACTTGGCGTCCAATGCATCCAAATATGGGGCCATCCTCTAATGCTGGTTTTCATGGTATGGGGCCTCCGTTGCTACCAAAATCTGGTGACATGGCATTGCCTACAAATGCAGGTGGTCCTATGACTGGCATGGGTGCCCACATAGATGGACGTTTTCAAGCCCAACCCCTATCACCAATGCAACAGAATTTCAACCAGCCTCGACCGCAAATTCCACCAGTCAATCAACAAACATCGCCATTGCAGAAACCTGTTCATTCGTCTCAAACTCCTATTCCCTACCCACAAACATCAACACATTCATCTCTTAGGCCGCGTGGTCAGCCACAGCATCCTCTTTCTGCCAGTCCTCTTCCTTCACAGCAGGGACTTGGCATAAGTGGACAGTTTCCAACTTCTCAAACCCAAACTCAGCAGAGTCCTTTGTCTGCTAAACTTCCTCAGGCCCCACTTGATTCCAGGGTACAATCTAATACAGCGTTGCGTACACCAAATCAACAGCAAGTTCCTCCCTCTATGCAGCAGCAGCAGCCATTTCAGCCTCTTCAGCAACCCCCTTCTCAGTTAGCTCAGATGTTGTCACAACAAAAACAGAATTTACAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAATTACAGATGATGCAACCATCTAGTCAAGCATTAACATCACAGCAAAATGCAGAAGCTACTAACAAGCAGTCTCCATGGGCTGGAACTGTTGCACAGGGAGCAGTCAGCACCCATGTGGCTGCACCCGCTGCGGATGTGCCTTCGTCCACATCTGCTGCTTCCAGTGTACCAGCAATAAGCCAGAACACGACTCTTGCAAAATGTAATTGGACAGAACACTTATCTCCTGAGGGCTTCAAGTACTACTATAATAGTGTCACTGGGGAAAGTCGGTGGGAGAAACCTGAGGAATTTGGATTATCTGAACAGCAACAACAGAGGCCATATGCTCAGCAGTCTCGAACGCAGTCACAGCCTTCAGTTCTTGCCGCCCAGCAAGTTGCACAAATCCAACAGGCTCAGCCTCAAAGTAATCTCCAAGGACAGGTTTTCAACCAGCAACAAATGCAGCTGCCCTCTGTGTCTTCTTCGTTCCAGGCATATGGAGTTACAGGTCATCAAAATAATCAGGAAGTTGGTTTTAAACAATTACAGGCATCAGCTATATCAGGTGGTGATCCTAGACGCTACTCACAGTTTCAGGGTATGAATACTGCACAAGAGTTGATGTGGAAAAATAAGCCTGCAGGTTTCAATTCAGGAGTTTAA 2289 0.4797 MNFNHRTPAGFRSGGVTHHHRAFDSPPRRPMGGEAPGGFGFNGNRSMGGDGPGDFGFNSNRLMGAEGSGEFGFNGHQPPPLSGQKRGFPFSSGRAGPSPGEHSHSDRSDGGNFAKLFVGSVPRTACEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRALHNQLTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVNEVEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALAAINGLNGIYTMRGCDQPLIVRFADPKRPRQGDSRGPAFGGSGFGPRFDAPGTRLPSKVSDPMGDRMPPSNTWRPMHPNMGPSSNAGFHGMGPPLLPKSGDMALPTNAGGPMTGMGAHIDGRFQAQPLSPMQQNFNQPRPQIPPVNQQTSPLQKPVHSSQTPIPYPQTSTHSSLRPRGQPQHPLSASPLPSQQGLGISGQFPTSQTQTQQSPLSAKLPQAPLDSRVQSNTALRTPNQQQVPPSMQQQQPFQPLQQPPSQLAQMLSQQKQNLQASFHSSQQAFSQLQQQLQMMQPSSQALTSQQNAEATNKQSPWAGTVAQGAVSTHVAAPAADVPSSTSAASSVPAISQNTTLAKCNWTEHLSPEGFKYYYNSVTGESRWEKPEEFGLSEQQQQRPYAQQSRTQSQPSVLAAQQVAQIQQAQPQSNLQGQVFNQQQMQLPSVSSSFQAYGVTGHQNNQEVGFKQLQASAISGGDPRRYSQFQGMNTAQELMWKNKPAGFNSGV* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1376 762 MobiDBLite consensus disorder prediction 493 577 - -
Lja4g1376 762 MobiDBLite consensus disorder prediction 285 478 - -
Lja4g1376 762 SMART rrm1_1 115 191 IPR000504 GO:0003723
Lja4g1376 762 SMART rrm1_1 206 281 IPR000504 GO:0003723
Lja4g1376 762 CDD WW 614 644 IPR001202 GO:0005515
Lja4g1376 762 MobiDBLite consensus disorder prediction 1 111 - -
Lja4g1376 762 CDD RRM2_FCA 206 285 IPR034645 -
Lja4g1376 762 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 285 IPR000504 GO:0003723
Lja4g1376 762 PANTHER FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 74 712 - -
Lja4g1376 762 SMART ww_5 612 644 IPR001202 GO:0005515
Lja4g1376 762 MobiDBLite consensus disorder prediction 641 665 - -
Lja4g1376 762 PANTHER TRANSFORMER-2-RELATED 74 712 - -
Lja4g1376 762 SUPERFAMILY RNA-binding domain, RBD 89 199 IPR035979 GO:0003676
Lja4g1376 762 MobiDBLite consensus disorder prediction 385 478 - -
Lja4g1376 762 ProSitePatterns WW/rsp5/WWP domain signature. 617 642 IPR001202 GO:0005515
Lja4g1376 762 Gene3D - 201 293 IPR012677 -
Lja4g1376 762 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 195 IPR000504 GO:0003723
Lja4g1376 762 Gene3D - 102 200 IPR012677 -
Lja4g1376 762 SUPERFAMILY WW domain 616 645 IPR036020 GO:0005515
Lja4g1376 762 MobiDBLite consensus disorder prediction 648 665 - -
Lja4g1376 762 Gene3D - 611 657 - -
Lja4g1376 762 ProSiteProfiles WW/rsp5/WWP domain profile. 617 644 IPR001202 GO:0005515
Lja4g1376 762 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 178 IPR000504 GO:0003723
Lja4g1376 762 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 273 IPR000504 GO:0003723
Lja4g1376 762 Pfam WW domain 616 642 IPR001202 GO:0005515
Lja4g1376 762 SUPERFAMILY RNA-binding domain, RBD 205 306 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1376 Lja-Chr4 12318400 12328290 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1376 107 291 Eukaryotic Initiation Factors Gene Family AT1G71770 26.961 1.56e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1376 - - lja:Lj4g3v2263920.2 1406.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1376 4 12318400 12328290 Lja4g1376 4 12318400 12328290 ECH