Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1374 ATGGAGGAGAAGAGAGAGAAAGCAGAGAAGTCATTCAGCTGCAGCACCATGTCAAATTCTGTGGCATTTTCCGACACTGGGAATCCCAGCTTCGGCTCCATTTTCTCATTCCTCATGGAAAAGATGCCACCACCACCACCCTCACCACCACTACCACCCCTATCACCGCTACCGCTGCCACCATTTCACCAACAAACTTCCTCTTTTGGAAGCTTCAAGGACTTGTTAACAATCGAGGATTTTGATCCTGCTTTGTTTGATTGGAACCCCACCACCACCACCAACACCGCCGCCGCTGCTGACGTCACTTCACCACCACTTTCTACCACCCAAATCAGCCACCCTGTTCCCTCCCCTGCCACCTCCAACATCCTTCCTGAGTACTCTTCTGATGTGCTCAACACTCCAACCACCCCCAACTCCTCCTCAATCTCATCATCGACGAATGGAACAGGGAATGATCGTGCAGAACCAGAACCAGAAGCTGAGAATGATGATGATGGAGATGCCATCAAAGATCAAAACCAGAATCAGAATAAGAATGGCAGGTTGAAGGGAAAGAAGCAGAAGCAGGAGAAGCAGGAGAAGAAGGAAAAGAAGGAAAAGAAGGAAAAAGAGCCAAGATATGCTTTCAAGACAAAGAGTGAGGTGGATAATTTGGATGATGGTTTTCGATGGCGTAAGTATGGTCAAAAAGCTGTCAAGAACAGCCCTAACCCAAGGAGCTACTATCGTTGCACCACCGCTGGTTGTGGCGTGAAGAAGCGGGTGGAGCGATCCTCTGAGGACACCTCCGTGGTGGTCACCACCTACGAAGGAGTCCACACCCATCGGTGCCCGGCTGCAAGGGGTAATTATGGTGGTGCGGCTCCTCATGGACTTGGTTCCAACCAGTATGTGCTGCCTTCACAGGCACAGAATCTCCAAGTTCAAAATTTTCAGAACCAGAATGTGCAGCAAGCTGCACCATCTTTCTCTACAACCCCTTCTTTCAATGCTGCTACCCCTGTACCACCTATCTCCTACAGAAACGCTATTATCCCATTACCTTTCAATGTTGCTAACCCAGCACCTAATACTCACTTTAATACTTCCTCCTTTGGGAGCTTCCTTCAAGGGATCAATGGTGTAGATTTTGTGCAGTCTTCTAGGTTTATGGCTAACAACAACCAGGGTTTGCTAAGGAACAATGGGCTTCTTCAGGACATGTTTGTGCCAGCTCACATGGAATTCGGAGGTGGAGGAGGACGAAGATGA 1257 0.4885 MEEKREKAEKSFSCSTMSNSVAFSDTGNPSFGSIFSFLMEKMPPPPPSPPLPPLSPLPLPPFHQQTSSFGSFKDLLTIEDFDPALFDWNPTTTTNTAAAADVTSPPLSTTQISHPVPSPATSNILPEYSSDVLNTPTTPNSSSISSSTNGTGNDRAEPEPEAENDDDGDAIKDQNQNQNKNGRLKGKKQKQEKQEKKEKKEKKEKEPRYAFKTKSEVDNLDDGFRWRKYGQKAVKNSPNPRSYYRCTTAGCGVKKRVERSSEDTSVVVTTYEGVHTHRCPAARGNYGGAAPHGLGSNQYVLPSQAQNLQVQNFQNQNVQQAAPSFSTTPSFNAATPVPPISYRNAIIPLPFNVANPAPNTHFNTSSFGSFLQGINGVDFVQSSRFMANNNQGLLRNNGLLQDMFVPAHMEFGGGGGRR* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1374 418 MobiDBLite consensus disorder prediction 12 33 - -
Lja4g1374 418 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 68 404 IPR044810 GO:0003700
Lja4g1374 418 MobiDBLite consensus disorder prediction 97 154 - -
Lja4g1374 418 MobiDBLite consensus disorder prediction 1 68 - -
Lja4g1374 418 SUPERFAMILY WRKY DNA-binding domain 213 280 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja4g1374 418 SMART WRKY_cls 220 279 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g1374 418 MobiDBLite consensus disorder prediction 188 214 - -
Lja4g1374 418 Pfam WRKY DNA -binding domain 221 278 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g1374 418 Gene3D WRKY domain 207 273 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja4g1374 418 ProSiteProfiles WRKY domain profile. 215 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g1374 418 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 68 404 - -
Lja4g1374 418 Coils Coil 181 206 - -
Lja4g1374 418 MobiDBLite consensus disorder prediction 40 60 - -
Lja4g1374 418 MobiDBLite consensus disorder prediction 97 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1374 Lja-Chr4 12310517 12312763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1374 205 287 WRKY Transcription Factor Family AT5G49520 75.000 1.60e-38 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja4g1374 WRKY 1.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1374 - - lja:Lj4g3v2263940.2 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1374 4 12310517 12312763 Lja4g1374 4 12310517 12312763 ECH
Lja6g2773 6 56818822 56822263 Lja4g1374 4 12310517 12312763 PCT