Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1373 ATGGCCTCATCACCGCATCCTGATTCGCCGTCATCACCCTCCGCCGGTTTCAACACTGACCAGCTTCCTCACACCCACACCAGCCGCGCCTCCTCCGACGATGACGAGGCTTCCGTCGATCCCGAAATCATCCGCGACGATGAACCACCTATCGAAGAAGAAGAAGACGGAGAGGATCTTTACAATGACAATTTCATGGATGATTATAGAAGGATGGATGAGGCTGACCAGTTCGAATCGGTTGGCTTGGATGACTCCATGGAGGATGATAGAGATATGGATCAGGTCATAGAGGATCGTAGGGCTGCTGAGATCGAGCTTGAAGCCCGTGATGGTCGCGCTTCCAATCGCAACAAGCTCCCTCAACTCCTCCATGACCAGGATACAGATGATGACAGCTATAGGCCTTCTAAGAGGACTCGAGCTGATTTTAGGCAGCCTATACCAAGCGATGATGATCAAAGCTCACCTGGGAGGTCTCAACGAGGACACTCAAGAGAAGATGTTCCCATGACTGATCAAACTGAGGGTGATGGGTATGAGGATGAATATGATGATGATGGTGGCCATGAGATGTACATTGTTCAAGGAACACTTCGAGAGTGGGTTACAAGGGATGAAGTGCGCCGCTTCATAGCCAGGAAATTCAAGGAATTCCTCCTCACGTATGTCAATCCAAAAAATGAACATGGTGACTTTGAATATGTGCGACTGATAAGTGAGATGGTGTCAGAGGACAAGTGCAGTTTGGAGATAGATTACAAACAATTTATCTATGTGCATCCCAACATTGCCATTTGGCTTGCTGATGCACCTCAGTCTGTTTTAGAAGTGATGGAAGATGTTGCCAAAAACGTTGTCTTTCAATTGCATCCAAATTACAGAAATATACATCAAAAGATTTATGTTCGTATAACCAACTTGCCAGTTTATGATCAGATTCGAAATATTAGGCAGATCCACTTAAATACAATGATCCGAATTGGGGGAGTAGTAACAAGGCGTTCCGGAGTTTTCCCCCAGCTGCAGCAGGTGAAATATGACTGTAACAAGTGTGGGGCCATTTTGGGACCCTTCTTTCAAAATTCCTATTCGGAGGTGAAAGTTGGATCCTGTCCCGAGTGTCAATCAAAAGGACCATTTATTGTCAATATTGAGCAGACAATTTACAGGAATTTTCAAAAGCTTAGTCTCCAAGAAAGCCCAGGAATAGTTCCTGCAGGTCGGCTTCCTCGATACAAGGAAGTGATATTATTGAATGATCAGATTGACTGTGCTCGACCCGGCGAAGAAATTGAGGTCACAGGTATTTATACCAATAACTTCGACTTATCCCTAAACACAAAGAATGGGTTCCCGGTGTTTGCCACTGTTATTGAGGCTAATCATGTTACAAAGAAACAAGATCTCTTCTCTGCCTACAAACTTACAGAAGAAGACATAAAAGATATTGCAGAATTATCCAAAGACCCCCGAGTCGGCGAAAGGATTATCAAGTCTATTGCTCCATCAATCTATGGTCATGAGGACATAAAAACTGCAATAGCTTTAGCTATGTTCGGAGGTCAGGAAAAAAGTGGTCAAGGAAAACATCGACTGAGAGGTGACATAAATGTTCTTCTTCTCGGTGATCCAGGAACTGCCAAGTCTCAATTTCTCAAGTACGTTGAAAAAACTGGGCAGAGAGCTGTGTACACTACTGGCAAAGGGGCTTCTGCTGTTGGTCTCACAGCTGCTGTTCACAAGGATCCAGTCACAAGGGAGTGGACCCTTGAGGGGGGAGCCCTTGTTCTTGCTGACAAAGGAATTTGTCTTATTGATGAGTTTGACAAGATGAATGACCAGGATAGGGTAAGTATCCATGAAGCAATGGAGCAGCAGAGCATAAGCATATCAAAAGCGGGAATTGTCACATCTCTTCAGGCACGGTGTTCTGTCATTGCTGCTGCCAATCCTGTTGGAGGCAGGTATGATTCCTCAAAAACATTTTCTCAAAATGTTGAGTTGACAGATCCTATCATTTCTCGTTTTGACATCCTCTGCGTTGTCAAGGATGTGGTTGATCCGGTCACTGATGAGTTGCTTGCAACGTTTGTAGTTGATAGTCATCATAAGTCACAACCCAAGGGTGCTAATAGAGATGACAAGTCCCTGAGTGAGGCCGCAGATGCTTATGGAGCTTCCATGCCAGCTGATCCCGAGATACTTCCTCAGGAGCTGCTGAAGAAGTACATTACCTATGCCAAGTTGAATGTCTTTCCGAGGTTACAAGATGCTGATTTGGATAAACTGACACATGTATATGCTGAATTGCGGAGAGAATCTTCTCACGGACAAGGAGTTCCCATTGCTGTAAGGCACATCGAATCAATGATAAGGATGTCTGAAGCTCATGCGAGAATGCATCTCAGAAAGCATGTCACACAAGAGGATGTGGACATGGCAATTCGTGTTCTACTTGATTCATTCATTTCCACTCAAAAGTTTGGGGTACAGAAAGCGCTGCAGAAGAGCTTCCGGAAGTATATAACTTTCAAGAAGGACTACAATGAATTACTCCATTATCTTCTCCGCGAGCTTGTAAAGAATGCTTTGCATTTTGAAGAAATTGTTTCTGGATCTGCTTCAGGTCTAACGCATGTAGATGTCAAACTAGATGATCTCGTCAACAAGGCTCAGGATCATGAAATATATGATTTGAAACCCTTCTTCAGTAGTAGCCTCTTCTCTAGTGGCAATTTTGCATTAGATGAAGAACGAGGAGTGATTAGGGTATTGCTCCACAATGAAATTTGA 2796 0.4413 MASSPHPDSPSSPSAGFNTDQLPHTHTSRASSDDDEASVDPEIIRDDEPPIEEEEDGEDLYNDNFMDDYRRMDEADQFESVGLDDSMEDDRDMDQVIEDRRAAEIELEARDGRASNRNKLPQLLHDQDTDDDSYRPSKRTRADFRQPIPSDDDQSSPGRSQRGHSREDVPMTDQTEGDGYEDEYDDDGGHEMYIVQGTLREWVTRDEVRRFIARKFKEFLLTYVNPKNEHGDFEYVRLISEMVSEDKCSLEIDYKQFIYVHPNIAIWLADAPQSVLEVMEDVAKNVVFQLHPNYRNIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGAILGPFFQNSYSEVKVGSCPECQSKGPFIVNIEQTIYRNFQKLSLQESPGIVPAGRLPRYKEVILLNDQIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFATVIEANHVTKKQDLFSAYKLTEEDIKDIAELSKDPRVGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKSGQGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSQNVELTDPIISRFDILCVVKDVVDPVTDELLATFVVDSHHKSQPKGANRDDKSLSEAADAYGASMPADPEILPQELLKKYITYAKLNVFPRLQDADLDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRKHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYITFKKDYNELLHYLLRELVKNALHFEEIVSGSASGLTHVDVKLDDLVNKAQDHEIYDLKPFFSSSLFSSGNFALDEERGVIRVLLHNEI* 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1373 931 SUPERFAMILY Nucleic acid-binding proteins 215 462 IPR012340 -
Lja4g1373 931 SMART mcm 310 824 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lja4g1373 931 MobiDBLite consensus disorder prediction 1 26 - -
Lja4g1373 931 MobiDBLite consensus disorder prediction 63 78 - -
Lja4g1373 931 Gene3D - 206 310 - -
Lja4g1373 931 Pfam MCM OB domain 313 440 IPR033762 -
Lja4g1373 931 MobiDBLite consensus disorder prediction 1 189 - -
Lja4g1373 931 Pfam Mini-chromosome maintenance protein 2 34 185 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Lja4g1373 931 MobiDBLite consensus disorder prediction 39 62 - -
Lja4g1373 931 MobiDBLite consensus disorder prediction 123 148 - -
Lja4g1373 931 ProSiteProfiles MCM family domain profile. 493 699 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja4g1373 931 Pfam MCM P-loop domain 481 703 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja4g1373 931 Pfam MCM N-terminal domain 214 307 IPR027925 -
Lja4g1373 931 MobiDBLite consensus disorder prediction 93 115 - -
Lja4g1373 931 CDD MCM2 496 822 - -
Lja4g1373 931 Gene3D - 341 391 - -
Lja4g1373 931 ProSitePatterns MCM family signature. 602 610 IPR018525 GO:0003677|GO:0005524|GO:0006260
Lja4g1373 931 Gene3D - 314 439 IPR012340 -
Lja4g1373 931 PRINTS Mini-chromosome maintenance (MCM) protein family signature 622 635 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja4g1373 931 PRINTS Mini-chromosome maintenance (MCM) protein family signature 534 549 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja4g1373 931 PRINTS Mini-chromosome maintenance (MCM) protein family signature 646 658 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja4g1373 931 PRINTS Mini-chromosome maintenance (MCM) protein family signature 594 608 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja4g1373 931 PRINTS Mini-chromosome maintenance (MCM) protein family signature 673 681 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja4g1373 931 Gene3D - 473 846 IPR027417 -
Lja4g1373 931 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 323 340 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Lja4g1373 931 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 442 453 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Lja4g1373 931 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 346 358 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Lja4g1373 931 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 457 468 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Lja4g1373 931 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 381 395 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Lja4g1373 931 MobiDBLite consensus disorder prediction 174 188 - -
Lja4g1373 931 Pfam MCM AAA-lid domain 739 823 IPR041562 -
Lja4g1373 931 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 503 827 IPR027417 -
Lja4g1373 931 MobiDBLite consensus disorder prediction 157 173 - -
Lja4g1373 931 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 131 924 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lja4g1373 931 PANTHER DNA HELICASE 131 924 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1373 Lja-Chr4 12291925 12297565 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1373 16 925 Core DNA Replication Machinery Family AT1G44900 74.973 0.0 1355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1373 K02540 - gmx:100799441 1588.55