Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1371 ATGCTCCATGCATTGATGAATCTTCTCTCTGTGTGTTTGAAGCCATTTGGCCGCGCCACCGATAGAGTCGAATCCGGTGGAATTCTCGGGAGCAGTTTTGCTGGAAGAGGAGAAGGTAAAGACGACTTGCTCTGGTTCCGCGACGTCGGAAAATATGCCTCCGGTGAATTCTCCATGGCCGTTGTTCAAGCCAACCAGGTTCTCGAGGACCAGAGCCAGATTGAGTCCGGTCCTCTCGGCACCTTCGTCGGTATTTACGATGGCCATGGCGGACCTGATGCTGCCAGATACGTTTGCGATCACTTGTTCCGCAATTTTCAAGCGATATCGGCTGAGTCACGTGGAGTGGTGACAGCTGAGACAATTGAAAGGGCATTCCTACAGACAGAAGAGGGGTACACTGCTCTTGTATCTAACTCATGGAACTCTCGACCTCAGATTGCAAATGCTGGGTCCTGTTGTCTGGTTGGAGTGATATTTCAGCAGACACTCTTTGTGGCAAATGCTGGAGATTCCCGTGTTGTATTGGGTAAGAAAGTTGGCAATACAGATGGTGTTGCTGCAATCCAACTGTCTACAGAACACAATGCAAATTTAGAGGCTATTAGAGAGGAGCTTAGAGAATTACACCCTAATGATCCCCAAATCGTTGTTCTCAAATATGGAGTGTGGAAAGTAAAAGGCATTATTCAGGTTTCTAGATCTATAGGCGACGTATATATGAAAGATGCGCGATTTAACCGGGAGCCACTTGCTGCAAAATTCAGACTTCCTGAACCAATGAACATGCCTATCATGACTGCTAATCCCACTATTCTTTCTCATTCTCTCCAACCAAATGATTTGTTCCTTATATTTGCATCAGATGGTTTATGGGAGCACCTAAGTAATGAAAAGGCTGTGGATATTGTCAACAGCAATCCACGTGCTGGTAGTGCCAAGATACTTGTCAAGGCTGCCCTCCACGAAGCAGCAAGAAAACGAGAAATGCGATATTCAGACCTACGTAAGATTGACAAGAAGGTTCGGCGCCATTTTCATGATGACATATCTGTTATTGTTTTATTCTTAAATCACGACCTTATATCCAGAGGCACGGTGCTAAACCCACCATTGTCATATCGAAGTGCTCTTGATCACGGTCTTGAATGA 1152 0.4566 MLHALMNLLSVCLKPFGRATDRVESGGILGSSFAGRGEGKDDLLWFRDVGKYASGEFSMAVVQANQVLEDQSQIESGPLGTFVGIYDGHGGPDAARYVCDHLFRNFQAISAESRGVVTAETIERAFLQTEEGYTALVSNSWNSRPQIANAGSCCLVGVIFQQTLFVANAGDSRVVLGKKVGNTDGVAAIQLSTEHNANLEAIREELRELHPNDPQIVVLKYGVWKVKGIIQVSRSIGDVYMKDARFNREPLAAKFRLPEPMNMPIMTANPTILSHSLQPNDLFLIFASDGLWEHLSNEKAVDIVNSNPRAGSAKILVKAALHEAARKREMRYSDLRKIDKKVRRHFHDDISVIVLFLNHDLISRGTVLNPPLSYRSALDHGLE* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1371 383 CDD PP2Cc 57 357 IPR001932 -
Lja4g1371 383 ProSitePatterns PPM-type phosphatase domain signature. 82 90 IPR000222 GO:0043169
Lja4g1371 383 SUPERFAMILY PP2C-like 65 358 IPR036457 -
Lja4g1371 383 PANTHER PROTEIN PHOSPHATASE 2C 42-RELATED 3 380 - -
Lja4g1371 383 PANTHER ALPHABET, ISOFORM E-RELATED 3 380 - -
Lja4g1371 383 ProSiteProfiles PPM-type phosphatase domain profile. 53 357 IPR001932 -
Lja4g1371 383 Gene3D - 47 365 IPR036457 -
Lja4g1371 383 SMART PP2C_4 43 355 IPR001932 -
Lja4g1371 383 Pfam Protein phosphatase 2C 79 326 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1371 Lja-Chr4 12272309 12276460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1371 1 377 PP2C-type Phosphatase Gene Family AT4G38520 56.995 3.72e-156 443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1371 4 12272309 12276460 Lja4g1371 4 12272309 12276460 ECH
Lja4g1371 4 12272309 12276460 Lja6g2777 6 56879270 56884140 PCT