Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1364 ATGGGAACTCCAGCCAGAGAAGAGGTGATGAAGAAGATCCAAGACCTGGAAGAAGGTCATGTTTACCTCAAGCAAGAAATGTCCAAGCTCAAGCTTTCAGATGGAAGGAAGCAGCAGCAGCAGCACCAGCATCATCATCGCCAGAGGTCTCACTCTGTGTCCCCGCAACGTTCCAGATTGGGCGCGCCACCCAGGAGTGGAACCGATGGAGTAGGTAGTTCTTCGTCGCGTCTTCAGAGGGAGAGTCACGGCGGCGGTGGTGTGAATTTGACTGAAGGACAGTATTTCAATATTTTGCAGTCAATGGGACAATCTGTTCATATATTGGATCGTAACTTTCGTATAATTTACTGGAACCATAGTGCTGAGAATCTATATGGTTATGCAGAAGAGGAAGCTCTAGGCCAAGAAGGGATTGAACTGCTTGCAGAACCCAGGGATTTGACCTTCGCCTATGATACAGTGAACCGTGTAATGATGGGAGAGAAGTGGACTGGGCAGTTCCTGGTCAAGAATAAGATGAGAGAGAATTTTTTAGCTGTAGCAACAATTACACCTTTTTATGATGATGATGGAAGTTTAGTTGGGACTATTTGTGTCTCAAATGATTCACGGCCATTTCTTGAAATGAGGGATCCGCTGTCCGGTGAAAAAAATGCTGAATCAAATTCAGGTTCCACCCGTCCTAGAAGTAGCTTTACGAATAAACTTGACCTTGACTCTCAACAGCCAATTCAAGTTTCTCTGGCATCTAGAATTTCAAATTTGGCATCAAAGATGAGTAATAAAGTTACGTCAAGAATGTGGACAGGAGAGAATAATGGGGATTGTGAAGGTGAGAGTGGAGAAAGTCATCATTCTGGACATAGGTTCTCAGAGTCTGTGCTTCCAGACCACAGAGAAGATGCTAATTCAAGTGGAGCTAGCACCCCCAGAGGTGATTTGCCTCAGTCACCTCTTGGTGCATTTTCTCACGTTGAAGAAAAATTCCAAGGAAAAACTTTGAGTGACCCTGGTGATGAGAGTGAAGGAAAACCTATTCACAAAATCATACATTCTAAGGCTGAAGCCTGGACTCAAAAGAAAACATTATCGTGGCCATGGAGAACAAATGATCGAGAAGGATCAGAGGCAAGGAATCTTCTTGTTGCTGGGCCGTCGAGGCAGAACGATCAAGAAAATGAGTCAGTTAGTCAGAATATTCTTTCTTCCGTTGAAAGTAATCACGCTACTAACAATGAGGCTCCGGGATCCTGGTCCTCCTACTTTAATGTTAACAGTACAAGTAGTGCTAGCAGCTGTGGGAGTGCCGGCAGTTGTGCTGTAACTAACAAAACAGATGTTGACACTGATTGCTTGGATTATGAAATTTTGTGGGAGGATCTGACAATTAGAGAACCAATTGGAGAAGGTTCTTGTGGAACTGTATATCATGCTATGTGGTATGGATCAGATGTAGCCGTCAAGGTTTTCTCAAACCAAGAATATTCAGATGATGTGATCCAGTCCTTCAGGCAAGAGGTGTCAGTTATGAAAAGACTTCGACATCCAAATATTCTTCTATTTATGGGGGCAGTGACTTCACCTCAACGTCTCTGCATTGTGACCGAGTTTCTCCCACGGGGAAGCTTATGTCGCTTGTTACACAGAAACACATCCAAACTTGACTGGAGGAGGCGAGTCAATATGGCCTTGGATATTGCACGAGGCATCAATTATCTTCATCATTGTAACCCTCCTATCATCCATAGAGATTTGAAGTCTTCAAATCTTCTAGTTGATAAGAATTGGACAGTGAAGGTTGGTGATTTTGGTCTTTCACGTCTGAAGCATGAAACATTTCTCACAACTAAGACAGGGAGGGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGAAATGAACCATCAGATGAGAAGTCGGATGTATACAGCTTTGGGGTGATATTATGGGAACTTGCGACAGAAAAGATCCCTTGGGAGAATCTCAACTCAATGCAGGTGATTGGAGCTGTAGGGTTCATGAATCAGCGGCTAGAAATTCCGAAAGATGTTGATACACGATGGACTTCTATAATTGAGGACTGCTGGCATAGTGATGCAACTTGCCGACCGACATTTCGGGAACTGATTGAAAGACTTAGGGAGCTGCATAAATGGTATGCCATTCAGTTCCAGGCAGCCCGGTCTGCTGGCGTGGAAAGCGCCCAAAAGGAGTCCTAG 2223 0.4444 MGTPAREEVMKKIQDLEEGHVYLKQEMSKLKLSDGRKQQQQHQHHHRQRSHSVSPQRSRLGAPPRSGTDGVGSSSSRLQRESHGGGGVNLTEGQYFNILQSMGQSVHILDRNFRIIYWNHSAENLYGYAEEEALGQEGIELLAEPRDLTFAYDTVNRVMMGEKWTGQFLVKNKMRENFLAVATITPFYDDDGSLVGTICVSNDSRPFLEMRDPLSGEKNAESNSGSTRPRSSFTNKLDLDSQQPIQVSLASRISNLASKMSNKVTSRMWTGENNGDCEGESGESHHSGHRFSESVLPDHREDANSSGASTPRGDLPQSPLGAFSHVEEKFQGKTLSDPGDESEGKPIHKIIHSKAEAWTQKKTLSWPWRTNDREGSEARNLLVAGPSRQNDQENESVSQNILSSVESNHATNNEAPGSWSSYFNVNSTSSASSCGSAGSCAVTNKTDVDTDCLDYEILWEDLTIREPIGEGSCGTVYHAMWYGSDVAVKVFSNQEYSDDVIQSFRQEVSVMKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLCRLLHRNTSKLDWRRRVNMALDIARGINYLHHCNPPIIHRDLKSSNLLVDKNWTVKVGDFGLSRLKHETFLTTKTGRGTPQWMAPEVLRNEPSDEKSDVYSFGVILWELATEKIPWENLNSMQVIGAVGFMNQRLEIPKDVDTRWTSIIEDCWHSDATCRPTFRELIERLRELHKWYAIQFQAARSAGVESAQKES* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1364 740 Pfam PAS fold 94 203 IPR013767 GO:0006355
Lja4g1364 740 SUPERFAMILY PYP-like sensor domain (PAS domain) 97 200 IPR035965 -
Lja4g1364 740 SMART pas_2 93 160 IPR000014 -
Lja4g1364 740 Gene3D Phosphorylase Kinase; domain 1 455 539 - -
Lja4g1364 740 MobiDBLite consensus disorder prediction 217 239 - -
Lja4g1364 740 ProSiteProfiles Protein kinase domain profile. 462 721 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1364 740 TIGRFAM sensory_box: PAS domain S-box protein 92 198 IPR000014 -
Lja4g1364 740 MobiDBLite consensus disorder prediction 278 300 - -
Lja4g1364 740 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 33 739 - -
Lja4g1364 740 Gene3D PAS domain 103 206 - -
Lja4g1364 740 ProSiteProfiles PAS repeat profile. 91 162 IPR000014 -
Lja4g1364 740 CDD STKc_MAP3K-like 468 714 - -
Lja4g1364 740 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 33 739 - -
Lja4g1364 740 MobiDBLite consensus disorder prediction 68 82 - -
Lja4g1364 740 MobiDBLite consensus disorder prediction 264 320 - -
Lja4g1364 740 SUPERFAMILY Protein kinase-like (PK-like) 450 713 IPR011009 -
Lja4g1364 740 MobiDBLite consensus disorder prediction 27 86 - -
Lja4g1364 740 MobiDBLite consensus disorder prediction 209 239 - -
Lja4g1364 740 PRINTS Tyrosine kinase catalytic domain signature 575 593 IPR001245 GO:0004672|GO:0006468
Lja4g1364 740 PRINTS Tyrosine kinase catalytic domain signature 685 707 IPR001245 GO:0004672|GO:0006468
Lja4g1364 740 PRINTS Tyrosine kinase catalytic domain signature 641 663 IPR001245 GO:0004672|GO:0006468
Lja4g1364 740 PRINTS Tyrosine kinase catalytic domain signature 536 549 IPR001245 GO:0004672|GO:0006468
Lja4g1364 740 PRINTS Tyrosine kinase catalytic domain signature 622 632 IPR001245 GO:0004672|GO:0006468
Lja4g1364 740 Pfam Protein tyrosine and serine/threonine kinase 462 714 IPR001245 GO:0004672|GO:0006468
Lja4g1364 740 Gene3D Transferase(Phosphotransferase) domain 1 541 724 - -
Lja4g1364 740 ProSitePatterns Serine/Threonine protein kinases active-site signature. 581 593 IPR008271 GO:0004672|GO:0006468
Lja4g1364 740 CDD PAS 102 203 IPR000014 -
Lja4g1364 740 SMART serkin_6 462 721 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1364 Lja-Chr4 12215122 12228074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1364 1 731 MAP Kinase Kinase Kinase AT3G06620 58.656 0.0 852
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Lja4g1364 PK_Tyr_Ser-Thr 3.6e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1364 - - gmx:100800867 1108.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1364 4 12215122 12228074 Lja4g1364 4 12215122 12228074 ECH
Lja4g1364 4 12215122 12228074 Lja6g2783 6 56918111 56925344 PCT