Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1352 ATGATCTTTCCTCCCAACGTTCCTTCCATCGAGGTTGACGCCTCCGATGTGTTGGACGATGGAAATCAAGCACAGGAGAAGAGCTTTAAATACGTGCCTCCGTCGCAACAATCAGGGAAGATTGTTCAGTGCTATGAACCTGCAACTATGAAATATTTGGGAAATGTTCCTGCATTAACGCATGATGAGGTCAAGGATCGAGTGGCTAAAGTAAGAAAGGCACAAAAAATGTGGGCTAAGTCCAGCTTCTTGCAAAGACGCTTGTTTTTGCATATACTACTAAAGTATATAATTAAACATCAAGCACTTATATGCGAAATATCTTCACGTGATACTGGAAAGACGATGGTAGATGCCTCTTTAGGAGAAATAATGACAACATGTGAGAAGATCAATTGGCTACTATCAGAGGGCGAGAAGTGGCTAAGGCCTGAATACCGGTCTTCTGGAGGATCAATGTTTCTTAAGAGAGCCAAAGTAGAATTTCACCCCCTTGGTGTCATTGGAGCCATTGTTTCGTGGAATAATCCTTTCCACAACATATTCAATCCTATGCTGGCAGCAGTTTTTTCTGGAAATGGGATTGTGATTAAGATATCAGAACATGCAAGTTGGTCTGGATGCTTTTTCTTCCGGATCATCCAGTCAGCCCTTGCTGCCATAGGAGCTCCAGAGGACCTTGTTGAGGTGATAACAGGGTTTGCTGAAACAGGAGAAGCATTGGTATCTTCAGTAGATAAAGTCATATTTGTGGGATCTCCTGGTGTTGGTAAGATGATAATGAGAAATGCTGCAGAGACACTTACACCAGTTACCCTAGAGCTTGGTGGAAAAGATGCATTTATTGTTTGTGAAGATGTAGATGTGGACCATGTTGCACAAATTGCTGTCAGGGCTGTTCTTCAGTCAAGCGGACAGAACTGTGCTGGGGCTGAGCGATTTTATGTCCACAGGGATATTTATTCTTCTTTTGTCAGTAAAGTTACCCAAATAGTAAAGTCTGTTACAGCTGGCCCACCACTTGTTGGAAAGTTTGATATGGGAGCTTTATGTATGCATGAGCATTCTGAAAAACTTGAAGGTCTCGTAAATGATGCTTTGGACAAAGGAGCTGAAATTGTTGCACGTGGAAGTTTTGGACATATAGGTGAAGATGCAGTTGATCAGTATTTCCCCCCTACTGTTATTGTGAATGTAAACCACTCAATGAGATTGATGCAAGAAGAGGTATTTGGACCAATCATGCCGATAATGAAATTTAGCTCTGATGAGGAGGCTGTCAAGCTTGCCAATGACTCAAAATATGGGCTTGGCTGTGCTGTTTTCTCAGGCATTCAGAGCCGTGCAAGAGAGATAGCTTCACAGATACATTCCGGAGTAGCTTCAATTAATGATTTTGCGGCATCATACAAGTGTCAGTCCCTACCATTTGGCGGTGTGAAACATAGTGGATTTGGACGATTTGGTGGTGTAGAAGGTTTGCGAGCTTGCTGTCTTGTTAAAGCAGTTGTTGAAGATCGATGGTGGCCATTTTATCCTGTTGCAGATAATGGATTTGAATTCCAGGAGTCATCTGTTGAATTATTTTATGGGATAAGCTATTGGGACCGTTTACGAGCATTAGGAGATGTTTTAGAAATGCTTAAAGAGCAGCAGAACCCTGCTGGCAGCAGCAGTAAGAGAAGAAATGACTAA 1695 0.423 MIFPPNVPSIEVDASDVLDDGNQAQEKSFKYVPPSQQSGKIVQCYEPATMKYLGNVPALTHDEVKDRVAKVRKAQKMWAKSSFLQRRLFLHILLKYIIKHQALICEISSRDTGKTMVDASLGEIMTTCEKINWLLSEGEKWLRPEYRSSGGSMFLKRAKVEFHPLGVIGAIVSWNNPFHNIFNPMLAAVFSGNGIVIKISEHASWSGCFFFRIIQSALAAIGAPEDLVEVITGFAETGEALVSSVDKVIFVGSPGVGKMIMRNAAETLTPVTLELGGKDAFIVCEDVDVDHVAQIAVRAVLQSSGQNCAGAERFYVHRDIYSSFVSKVTQIVKSVTAGPPLVGKFDMGALCMHEHSEKLEGLVNDALDKGAEIVARGSFGHIGEDAVDQYFPPTVIVNVNHSMRLMQEEVFGPIMPIMKFSSDEEAVKLANDSKYGLGCAVFSGIQSRAREIASQIHSGVASINDFAASYKCQSLPFGGVKHSGFGRFGGVEGLRACCLVKAVVEDRWWPFYPVADNGFEFQESSVELFYGISYWDRLRALGDVLEMLKEQQNPAGSSSKRRND* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1352 564 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 277 469 IPR016163 GO:0016620
Lja4g1352 564 Pfam Aldehyde dehydrogenase family 37 503 IPR015590 GO:0016491
Lja4g1352 564 PANTHER ALDEHYDE DEHYDROGENASE-LIKE PROTEIN YHR039C-RELATED 30 508 - -
Lja4g1352 564 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 301 312 IPR016160 GO:0016491
Lja4g1352 564 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 273 280 IPR029510 GO:0016491
Lja4g1352 564 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 39 500 IPR016162 GO:0016491
Lja4g1352 564 SUPERFAMILY ALDH-like 36 508 IPR016161 GO:0016491
Lja4g1352 564 CDD ALDH_F15-22 45 507 - -
Lja4g1352 564 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 30 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1352 Lja-Chr4 12121104 12128394 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1352 1 560 Aldehyde Dehydrogenase Gene Family AT3G66658 74.346 0.0 904
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1352 - - gmx:100802990 1016.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1352 4 12121104 12128394 Lja4g1352 4 12121104 12128394 ECH