Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1338 ATGGCAAATAACTTAGCAGGTCAGTTGGCGGGTTCAGAGATACATGGATTCCACACATTGCAAGAGCTGGATGTGGGGAGCATTATGGAGGAAGCAAGAACCAGGTGGCTTCGTCCCAATGAGATTCATGCCATGCTTTGTAATTACAAGTATTTCACCATTAATGTCAAGCCAGTGAATTTACCCAAAAGTGGTACTATTGTATTATTTGACCGCAAGATGCTTAGGAACTTTCGAAAAGATGGTTACAACTGGAAAAAGAAAAAGGATGGGAAAACTGTTAAAGAAGCCCATGAGCATTTAAAAGTTGGTAATGAAGAAAGGATCCATGTATATTATGCACATGGCCAAGACCACCCAAACTTTGTTCGTAGATGTTATTGGCTGCTTGATAAGAGTTTGGAACACATAGTCCTTGTTCATTACCGGGAAACACAGGAGTTGCATGGTTCTCCTGTAAATTCAAACTCTGTTACGGCCTCTGATCCAACTGCACCACTGATTTTATCAGAAGAAATAGATTCAGGGACAACAACTGCATATACTGGTGAGGTTAATGATTATATAAGAGTCGAAAGTCATGAACGGAAGCTTCATGAGCTTAATACACTTGAATGGGATGACCTGGTGGTTGTAAGCGATCCTAGCACCTCTGCTACAACTAATGGAGGCAAATTTCCTTATTTTGACAGACAAAATCAAATTTTACGGAATAATAGTTTTGGCAATGTAGCCAGCAATCCACCTGCAGAAAATCCTACTTTTAATAATTTAACTCAGCCAATTGCTGGAAGCAATAGTGTTCCTTACAATTTTTCAGAAGGTGTTAATCTTCAGACAGTGGACAATCAAGTAAATCCAAATGAGCAAAGGAATGATCCTGTCTCTCTAGGTGGTGTTGATTCCTTGGACCCTTCAGTCAATGACACATTGCAAAGTCAGGACAGCTTTGGAATGTGGGTGAACCACATCATGTCTGATTCACCATGTTCAGCCGATGGGTCAGCGCTTGAATCCTCAGTATCATCCATTCAAGAACCATATTCGTCTCTGGTAGTGGATAATCAGCAACATTTTCTGCCAGGACAAGTATTTAATATCACTGATGTGTCCCCTGCAGGGGTGTCTTCCGCCGAGAAATCAAAGGTCCTGGTGACTGGATTCTTTCTTAAGGAATATCTGCAGCTCTCAAAGTACAATCTATTGTGTGTCATTGGTGATGTAAGCGTTCCTGCAGAAATTGTTCAGAACGGGGTCTACAGATGCTGGGTATCATCACATTCTCCTGGATTCGTGAATCTCTTCTTGAGCTTTGATGGTCATAAGCCGATAAGCCAAGTTGTTAATTTTGAGTATCGTACTCCTGTTTTGCATGACCCAGCAGCTTCTTTGGAAGAGAAGGACAGCTGGGATAAATTTCGACTTGAAATGAGGCTTGCTTGTTTGCTCTTTGCTAAACAACAGACTCTTGATATTATCTCTTGTAAAGTGTCACCTAATAGACTGGAGGAGGCTAAGGAATTTGCTCTCAAAACAGCATTTATTTCCGATAGTTGGCAATACTTAATCAAATCAACCGAAGACAACCAAATTCCATTTTCACAAGCAAAAGATGCCCTTTTTGGAATTGCATTGAAAAACAGATTAAAGGAATGGATTTTGGAAGGAATTGTTTCAGGCTCTAAGACTACTGAGTTTGATGCACAAGGCCAGAGTGTAATACATTTGTGTGCAATTTTGGGATATAATTGGGCCGTTTCCTTATTTTCATGGTCAGGCTTGTCACTGGATTTCCGCGATAAATTTGGATGGACAGCACTTCACTGGGCAGCATATTGTGGAAGAGAGAAAATGGTTGCAACTCTGTTGTCTGCTGGGGCAAAGCCAAATTTGGTCACAGATCCAACTGCACAAAACCCTGGTGGATGTACTGCTGCTGATCTTGCTTATATGAGGGGCTATGATGGCTTAGCAGCTTACCTTTCAGAGAAGTCTCTGGTTGAGCAGTTTAATGACATGAGCTTAGCTGGAAATATCAGGGGTTCACTGGAAACTACCATGGATGATCCGGTAAATTATGAGAACCTTACCGAGGACCAGCTGAACCTGAAGGACACTTTGGCAGCGTACCGAACAGCTGCTGAGGCAGCGTCGCGCATACAAGCTGCATTTAGGGAGCACTCCCTAAAATTGCGAACTGAGGCAATTGAGTTTTCCAGTCCAGAAGCTGAAGCGCGTGATATAGTGGCAGCAATGAAGATTCAGCATGCCTTTCGCAACTTTGAGACAAGAAAAATGATGGCAGCTGCTGCTCGAATTCAGCATACATTCCGTACATGGAAGATTCGTAAAGAATTTCTCAACATGCGTCGTCAGGCAATTAAAATTCAAGCTGCTTTCAGGTGCTTTAAAGCGCGGAAGCAATATCGTAAAATTCTCTGGTCCGTTGGTGTGGTTGAGAAAGCAGTGCTGCGGTGGCGTTTGAAGAGAAAGGGCTTTCGGGGGCTCCATCTTAATACCGTGGAATCAACAGAAGATCAAAGTCAGAACAGTGATGTAGAGGAAGAATTCTTTCGAACCGGTAGGAAGCATGCTGAAGAGCGTGTAGAGAGATGTGTAGTGCGTGTGCAGGCTATGTTCCGTTCTAAGAAAGCACAAGAAGAGTACAGGAGGATGAAGTTGGCCCTTAATCAAGCAAAGCTGGAACGGGAATATGAACAACTCCTCAGTAGTGAAGTTGACATGAAACAGAAGAAGACATAA 2763 0.4253 MANNLAGQLAGSEIHGFHTLQELDVGSIMEEARTRWLRPNEIHAMLCNYKYFTINVKPVNLPKSGTIVLFDRKMLRNFRKDGYNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDHPNFVRRCYWLLDKSLEHIVLVHYRETQELHGSPVNSNSVTASDPTAPLILSEEIDSGTTTAYTGEVNDYIRVESHERKLHELNTLEWDDLVVVSDPSTSATTNGGKFPYFDRQNQILRNNSFGNVASNPPAENPTFNNLTQPIAGSNSVPYNFSEGVNLQTVDNQVNPNEQRNDPVSLGGVDSLDPSVNDTLQSQDSFGMWVNHIMSDSPCSADGSALESSVSSIQEPYSSLVVDNQQHFLPGQVFNITDVSPAGVSSAEKSKVLVTGFFLKEYLQLSKYNLLCVIGDVSVPAEIVQNGVYRCWVSSHSPGFVNLFLSFDGHKPISQVVNFEYRTPVLHDPAASLEEKDSWDKFRLEMRLACLLFAKQQTLDIISCKVSPNRLEEAKEFALKTAFISDSWQYLIKSTEDNQIPFSQAKDALFGIALKNRLKEWILEGIVSGSKTTEFDAQGQSVIHLCAILGYNWAVSLFSWSGLSLDFRDKFGWTALHWAAYCGREKMVATLLSAGAKPNLVTDPTAQNPGGCTAADLAYMRGYDGLAAYLSEKSLVEQFNDMSLAGNIRGSLETTMDDPVNYENLTEDQLNLKDTLAAYRTAAEAASRIQAAFREHSLKLRTEAIEFSSPEAEARDIVAAMKIQHAFRNFETRKMMAAAARIQHTFRTWKIRKEFLNMRRQAIKIQAAFRCFKARKQYRKILWSVGVVEKAVLRWRLKRKGFRGLHLNTVESTEDQSQNSDVEEEFFRTGRKHAEERVERCVVRVQAMFRSKKAQEEYRRMKLALNQAKLEREYEQLLSSEVDMKQKKT* 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1338 920 Coils Coil 882 902 - -
Lja4g1338 920 Gene3D - 765 813 - -
Lja4g1338 920 ProSiteProfiles IQ motif profile. 870 898 IPR000048 GO:0005515
Lja4g1338 920 ProSiteProfiles Ankyrin repeat profile. 602 634 IPR002110 GO:0005515
Lja4g1338 920 SMART iq_5 788 810 IPR000048 GO:0005515
Lja4g1338 920 SMART iq_5 868 890 IPR000048 GO:0005515
Lja4g1338 920 SMART iq_5 765 787 IPR000048 GO:0005515
Lja4g1338 920 Pfam Ankyrin repeats (3 copies) 552 631 IPR002110 GO:0005515
Lja4g1338 920 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 15 918 - -
Lja4g1338 920 SMART CG_1_2 28 146 IPR005559 GO:0003677
Lja4g1338 920 SMART ANK_2a 602 631 IPR002110 GO:0005515
Lja4g1338 920 SMART ANK_2a 641 672 IPR002110 GO:0005515
Lja4g1338 920 ProSiteProfiles IQ motif profile. 766 795 IPR000048 GO:0005515
Lja4g1338 920 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 15 918 - -
Lja4g1338 920 SUPERFAMILY Ankyrin repeat 550 664 IPR036770 -
Lja4g1338 920 Gene3D - 529 671 IPR036770 -
Lja4g1338 920 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Lja4g1338 920 Gene3D Immunoglobulins 361 456 IPR013783 -
Lja4g1338 920 ProSiteProfiles Ankyrin repeat region circular profile. 602 630 - -
Lja4g1338 920 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Lja4g1338 920 Pfam IQ calmodulin-binding motif 791 810 IPR000048 GO:0005515
Lja4g1338 920 ProSiteProfiles IQ motif profile. 789 813 IPR000048 GO:0005515
Lja4g1338 920 SUPERFAMILY E set domains 366 453 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1338 Lja-Chr4 12018966 12028963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1338 28 902 CAMTA Transcription Factor Family AT3G16940 54.659 0.0 904
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Lja4g1338 CG-1 3.1e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1338 K21596 - gmx:100793970 1531.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1338 4 12018966 12028963 Lja4g1338 4 12018966 12028963 ECH
Lja4g1338 4 12018966 12028963 Lja6g2301 6 51957456 51967657 PCT