Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1334 ATGGGGAGAGCTCCTTGTTGTGAGAAAGTGGGGTTGAAGAAAGGAAGATGGACTGCTGAAGAGGATAAGATCTTAACTGATTACATCCAACAAAATGGTGAGGGATCATGGAGATCCTTGCCCAAGAATGCAGGTTTACTAAGATGCGGGAAGAGTTGCAGACTAAGATGGATCAACTACTTGAGATCAGATGTGAAGAGAGGCAACATCACTCCTCAAGAGGAAGAGATCATTGTCAAGTTGCATGCTATTCTTGGTAACAGGTGGTCTGTAATAGCAGGACATCTACCAGGGCGCACGGACAATGAGATAAAAAACTATTGGAATTCTCATTTGAGGAGAAAGATTTACTGCTTCATGAAGCAGTTAAATGAGTCTCTACCTCCCATTGACTTAGCTGCTATAAACGTTGCTGCTTCTTCCAAGAGAAGATCATCAGGTCGAGGTGCAAATCAGCAAGCACCTAAGCAAGAGGACAATAAGAAAATTCAAGAAGGGAACAATGATCTTCAAGCTCAATCAAAAAGAGAACCAACTTCACAAAGTTATAATGATAATAACAACAGTGTTGGAGATCATGAAATGCAAGGTTATAATTCATTCAACTCAAATAATGGTACAATTGCCTCATGCCCCAATATGGAAGAAATTGGGGACTTAGGACCATATGAGTGGCTAGATGATGAAATCATGAGACTTAGTTACATGTTTGAAAGTGGGGTTCTTGTAAACCCAGATGGCAATATAACCAGTAACGAAGATCAAGTTGGACTAGTTGGTGAAGAAATAATGCAAGGGAGGAATAATGAGGAGAGCAATTTCAGTGGAGAGTGGAACAACACTACTAGCTGTTCTTCAGTGAACTCTGTTTATGATTATCAGTGGCCTGATATGCTATTAGAAGGTAGTAGTGTTCAATCTCATAATCAATGGGAACTTTGTGAAGAAGACCAGAACATGAATTGCTTGTGGGGTAGCAGCAGCAACTGTGAAATGAATGGCTTTTATCAGTGA 1014 0.4034 MGRAPCCEKVGLKKGRWTAEEDKILTDYIQQNGEGSWRSLPKNAGLLRCGKSCRLRWINYLRSDVKRGNITPQEEEIIVKLHAILGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFMKQLNESLPPIDLAAINVAASSKRRSSGRGANQQAPKQEDNKKIQEGNNDLQAQSKREPTSQSYNDNNNSVGDHEMQGYNSFNSNNGTIASCPNMEEIGDLGPYEWLDDEIMRLSYMFESGVLVNPDGNITSNEDQVGLVGEEIMQGRNNEESNFSGEWNNTTSCSSVNSVYDYQWPDMLLEGSSVQSHNQWELCEEDQNMNCLWGSSSNCEMNGFYQ* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1334 337 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lja4g1334 337 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lja4g1334 337 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja4g1334 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja4g1334 337 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja4g1334 337 MobiDBLite consensus disorder prediction 166 203 - -
Lja4g1334 337 CDD SANT 16 61 IPR001005 -
Lja4g1334 337 Gene3D - 71 116 - -
Lja4g1334 337 PANTHER MYB TRANSCRIPTION FACTOR 2 293 - -
Lja4g1334 337 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 293 - -
Lja4g1334 337 Gene3D - 13 66 - -
Lja4g1334 337 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja4g1334 337 MobiDBLite consensus disorder prediction 141 203 - -
Lja4g1334 337 CDD SANT 71 112 IPR001005 -
Lja4g1334 337 SMART sant 66 114 IPR001005 -
Lja4g1334 337 SMART sant 13 63 IPR001005 -
Lja4g1334 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja4g1334 337 MobiDBLite consensus disorder prediction 141 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1334 Lja-Chr4 11944505 11946417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1334 1 269 MYB Transcription Factor Family AT5G49330 50.186 2.38e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja4g1334 Myb_DNA-binding 5.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1334 K09422 - gmx:100795019 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1334 4 11944505 11946417 Lja4g1334 4 11944505 11946417 ECH