Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1333 ATGTCGCTCCGCCCAAATGCCAGAACCGACATCCGCCGCAACCGCTACAAGATCGCCGTCGACGCCGAAGAGGGCCGCCGTAGGAGAGAGGACAACCTCGTCGAGATACGCAAAACCAAGCGCGAGGAGAGCTTGCAGAAGAAGCGCCGTGAGGGCCTTCAAGATCACCAACAGCTCTCCACTCCTCTTCTCGACAGCAAGCTAGAGAGTATTCCTTCCATGGTTAATGGTGTCTGCTCGGTTGATAATAATCTGCAGCTGGAAGCCACCGCGCAGTTCCGCAAGCTTCTTTCAATGGAACGGAACCCTCCGATTGAGGAAGTTATTCAATCTGGTGTTGTACCGCGCTTTGTTGAGTTTCTTGTTAGGGAGGATTTCCCTCAACTTCAGTTTGAGGCTGCGTGGGCTCTCACTAATATAGCATCGGGAACTTCTGAGCATACTAAGGTGGTGATTGATCATGGAGCTGTTCCTATCTTTGTGAAGCTACTTAATTCACCTAATGGTGATGTTCGGGAGCAGGCAGTGTGGGCTTTGGGGAATATTGCTGGTGACTCCCCAATGTGTCGTGATCTAGTGCTTAGCCACGGTGCCCTCGTCGCACTGTTGTCCCAGTTTAATGAGCATGCGAAACTTTCAATGCTGAGAAATGCCACATGGACATTGTCAAACTTTTGTAGGGGAAAACCTCAGCCTGCATTTGAGCTGGTGAGTCCCGCACTTCCAGCCCTTGCGCGTTTAATTTTTTCTAATGACGATGAAGTTTTGACGGATGCCTGCTGGGCATTATCATATCTCTCTGATGGCGCAAATGATAAAATCCAAGCTGTAATTGAGTCAGGTGCATGTGAGCGACTGGTGCAGCTTCTTCTGCATCCAACTCCTTCAGTGGTGATTCCGGCCCTTCGTACTGCTGGAAATATTGTGACTGGAGATGATATGCAGACTCAGTGTATTATCAATCATGGTGCACTCCCTTCCCTTTTGAGCCTGTTGACACATAATCATAAAAAAAGCATCAAGAAAGAAGCTTGTTGGACTATATCAAACATTACTGCTGGAAATAAGGAACAAATACAGGCTGTTATTGAAGCTGGTCTCATTGCTCCACTTGTCAATCTTCTCCAAAATGCTGAGTTTGAAGTTAAAAAAGAAGCTGCTTGGGCAATCTCAAATGCTACGTCTGGTGGAACAAATGAGCAGATTAAGTACATGGCGGATCAGGGTTGCATAAAACCTCTTTGTGATCTGCTTGTCTGTCCTGATCCAAGAATAGTGACTGTCTGTTTGGAGGGCTTAGAGAACATTCTGAAAGTTGGAGAAGCTGAGAGGAACTTGGGTAACTCTGAAGATGTCAACTTGTATGCTCAGATGATTGAGGATGCTGACGGATTGGAGAAGATAGATAACCTGCAAAATCATGACAACAACGAAATATATGAGAAGGTTGTTAAAATTCTTGAAACATACTGGTCAGAAGATGTAGATGAGACACTACCTTCAAGTGATGGTGCCCCACCGGAATTCAATTTTGGAAGTAACAATCCTTCAGTACCATCTGGAGGATTCAACTTCATCTGA 1581 0.4611 MSLRPNARTDIRRNRYKIAVDAEEGRRRREDNLVEIRKTKREESLQKKRREGLQDHQQLSTPLLDSKLESIPSMVNGVCSVDNNLQLEATAQFRKLLSMERNPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLNSPNGDVREQAVWALGNIAGDSPMCRDLVLSHGALVALLSQFNEHAKLSMLRNATWTLSNFCRGKPQPAFELVSPALPALARLIFSNDDEVLTDACWALSYLSDGANDKIQAVIESGACERLVQLLLHPTPSVVIPALRTAGNIVTGDDMQTQCIINHGALPSLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIEAGLIAPLVNLLQNAEFEVKKEAAWAISNATSGGTNEQIKYMADQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAERNLGNSEDVNLYAQMIEDADGLEKIDNLQNHDNNEIYEKVVKILETYWSEDVDETLPSSDGAPPEFNFGSNNPSVPSGGFNFI* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1333 526 MobiDBLite consensus disorder prediction 507 526 - -
Lja4g1333 526 Gene3D - 11 50 IPR036975 GO:0006606
Lja4g1333 526 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 323 366 IPR000225 GO:0005515
Lja4g1333 526 SMART arm_5 144 184 IPR000225 GO:0005515
Lja4g1333 526 SMART arm_5 398 438 IPR000225 GO:0005515
Lja4g1333 526 SMART arm_5 186 227 IPR000225 GO:0005515
Lja4g1333 526 SMART arm_5 355 395 IPR000225 GO:0005515
Lja4g1333 526 SMART arm_5 229 268 IPR000225 GO:0005515
Lja4g1333 526 SMART arm_5 270 310 IPR000225 GO:0005515
Lja4g1333 526 SMART arm_5 101 142 IPR000225 GO:0005515
Lja4g1333 526 SMART arm_5 312 353 IPR000225 GO:0005515
Lja4g1333 526 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 112 155 IPR000225 GO:0005515
Lja4g1333 526 MobiDBLite consensus disorder prediction 496 526 - -
Lja4g1333 526 PIRSF Importin_alpha 2 525 IPR024931 GO:0005737|GO:0006606|GO:0061608
Lja4g1333 526 PANTHER IMPORTIN SUBUNIT ALPHA 2 517 - -
Lja4g1333 526 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Lja4g1333 526 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 239 281 IPR000225 GO:0005515
Lja4g1333 526 SUPERFAMILY ARM repeat 12 494 IPR016024 -
Lja4g1333 526 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 366 401 IPR000225 GO:0005515
Lja4g1333 526 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 155 197 IPR000225 GO:0005515
Lja4g1333 526 Pfam Armadillo/beta-catenin-like repeat 238 267 IPR000225 GO:0005515
Lja4g1333 526 Pfam Armadillo/beta-catenin-like repeat 145 183 IPR000225 GO:0005515
Lja4g1333 526 Pfam Armadillo/beta-catenin-like repeat 313 353 IPR000225 GO:0005515
Lja4g1333 526 Pfam Armadillo/beta-catenin-like repeat 271 309 IPR000225 GO:0005515
Lja4g1333 526 Pfam Armadillo/beta-catenin-like repeat 186 227 IPR000225 GO:0005515
Lja4g1333 526 Pfam Armadillo/beta-catenin-like repeat 102 142 IPR000225 GO:0005515
Lja4g1333 526 Pfam Armadillo/beta-catenin-like repeat 355 394 IPR000225 GO:0005515
Lja4g1333 526 Pfam Armadillo/beta-catenin-like repeat 398 436 IPR000225 GO:0005515
Lja4g1333 526 Gene3D - 69 492 IPR011989 -
Lja4g1333 526 Pfam Atypical Arm repeat 453 501 IPR032413 -
Lja4g1333 526 PANTHER IMPORTIN ALPHA 2 517 - -
Lja4g1333 526 Pfam Importin beta binding domain 12 90 IPR002652 GO:0006606|GO:0061608
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1333 Lja-Chr4 11932694 11937994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1333 127 408 U-box Gene Family AT3G46510 23.509 8.19e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1333 K15042 - gmx:100780020 903.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1333 4 11932694 11937994 Lja4g1333 4 11932694 11937994 ECH
Lja4g1333 4 11932694 11937994 Lja5g1395 5 13982647 13987329 ECH
Lja4g1333 4 11932694 11937994 Lja6g2287 6 51838134 51841998 PCT