Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1332 ATGGTGGATCCGACTGGAAAAGGATCAGATGCGGAAGACGGAAACCCTAACTCCGCCGCCGCCGCCGCTTCTTCCGGTAGCGAGCAGAAGAAAACCTGCGCCGATTGCGGCACCTCCAAGACTCCTCTCTGGAGAGGTGGACCTGCAGGACCCAAGTCGCTATGCAATGCTTGCGGGATCAGGAGCAGGAAGAAGAAGAGAGCGATTTTGGGGATAAGCAAAGGGAACAGCAACAACAATAACAGCAACAATGAAGATGGAATCAAGAAGGGGAAACGGAGCAAACTAGGCGGCGATCGCGCGAGCTTGAAGCAGAAGCTATTGGCGTTAGGGAGGGAGGTTTTGATGCAGCGATCGCATTGGAAGAAATTGGGGGAAGAAGAACAAGCTGCAGTGCTTTTAATGTCACTCTCTTATGGATCAGTTTATGCTTAA 435 0.5172 MVDPTGKGSDAEDGNPNSAAAAASSGSEQKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGISKGNSNNNNSNNEDGIKKGKRSKLGGDRASLKQKLLALGREVLMQRSHWKKLGEEEQAAVLLMSLSYGSVYA* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1332 144 MobiDBLite consensus disorder prediction 1 56 - -
Lja4g1332 144 ProSiteProfiles GATA-type zinc finger domain profile. 27 63 IPR000679 GO:0006355|GO:0043565
Lja4g1332 144 ProSitePatterns GATA-type zinc finger domain. 33 58 IPR000679 GO:0006355|GO:0043565
Lja4g1332 144 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 28 68 - -
Lja4g1332 144 SMART GATA_3 27 78 IPR000679 GO:0006355|GO:0043565
Lja4g1332 144 MobiDBLite consensus disorder prediction 70 99 - -
Lja4g1332 144 MobiDBLite consensus disorder prediction 18 36 - -
Lja4g1332 144 Gene3D - 28 99 IPR013088 GO:0006355|GO:0008270
Lja4g1332 144 Pfam GATA zinc finger 33 67 IPR000679 GO:0006355|GO:0043565
Lja4g1332 144 PANTHER OS01G0976800 PROTEIN 1 144 - -
Lja4g1332 144 CDD ZnF_GATA 32 67 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1332 Lja-Chr4 11916814 11917795 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1332 1 144 C2C2-Gata Transcription Factor Family AT3G06740 52.174 2.20e-42 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lja4g1332 GATA 1.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1332 - - aprc:113847917 200.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1332 4 11916814 11917795 Lja4g1332 4 11916814 11917795 ECH
Lja4g1332 4 11916814 11917795 Lja1g0552 1 5015240 5016854 ECH