Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1330 ATGAATCATAGCTGTAACGGAAAGGGATCCATGATGTCAACGGTGGTTATGAAATCCTCCGGCGAAGCCGTCTCCGACCAGTTTCCGGCGGGTCTCCGGGTTCTGGTGGTGGATGATGATCCCACGTGCCTCATGATCCTTGAGAAGATGCTACGCACATGTCTCTATGAAGTTACCAAATGCAATCGAGCAGAGAAAGCACTCACACTGCTCAGAGAGAGGAAGAATGGGTTTGACATTGTTATAAGTGATGTGCACATGCCAGACATGGATGGATTTAAGCTTCTAGAGCACATTGGATTGGAGATGGATCTTCCTGTTATTATGATGTCAGCAGACGATGGTAAAAATGTTGTTTTGAAGGGTGTGACACATGGTGCTTGTGATTACCTGATTAAGCCTGTTCGCATTGAGGCTTTGAAGAACATATGGCAGCATGTTGTTCGGAAGAGAAAGAATGAGTGGAAAGATACGGAGCAATCGGGCAGTGCTGAAGAGGGGGGAGACAGGCAGCCAAGGCCATCTGATGATGCGGATTACTCGTCCTCGGCAAACGAAGGCAGCTGGAGAAACTCGAAGAAGAGAAGGGACGATGAGGAGGAAGGAGACGAGCGGGATGACTCGTCCACATTGAAGAAGCCGCGAGTTGTTTGGTCTGTGGAGCTGCATCAACAATTTGTGGCTGCTGTGGATCAACTGGGAATAGATAAGGCTGTTCCTAAGAAGATTTTGGAATTGATGAACGTTCCTGGGCTCACTAGAGAAAATGTTGCCAGCCACCTGCAGAAATACCGATTGTATCTTCGGAGACTGAGTGGAGTTTCTCAGCACCCAAATAACTTGAACAACTCATTTCTTGGCACACAAGACGCTTCATTTGGCACAATTTCATCAATTAATGGGATTGATCTTCAAACCCTTGCAGTTGCTGGCCAACTGCCAGCACAAAGTCTAGCCACTCTTCAAGCAGCAGGACTAGGCAGGTCAAATACAAAAGCAGGTGTGCACATGCCTCTCATGGATCAAAGAAATCTTTTCAGTTTTGAAAATCCAAGGTTAAGATTTGGAGAAGGGCAACAGCACCATTTAAGCAATAGTAAACCAATGAACCTACTTCATGGAATCCCTACCAACATGGAGCCGAAGCAGCTCGCTAATTTGCACCAGCCTACTCAATCCCTTGGCAACTTGAACATGCGAGTCAATGGTCCCGCTTCACAGAACAACCCCTTATTGATGCAGATGACACAATCCCAACCTAGAGGTCAGATGCTAAGTGAAAACAACGCTCCTCGTGTTTCCAGACTACCGAATCCCTTGGGGCAGCCTAATGTATCAAATGGAATCTCTGATGGTCTTCTAGGCAGAAACGGGATTGCTGGGAGTAACAGACCACCTGCTTATAATCCTGTTCCACAGAACTCTTCATTGTTTAATTTTCCCATGAATCAAACTACTGATATGTCTATCAATAGTTTCCCTCTTGGAAGCACTCCAGGTATATCCAGTGTCACAAGCAAAGGCTCATTTCAAGACGAAGTTACGTCGGGAATTAAAGGATCTGTTGGGTTTCCAAGTTATGACATTTTTAATGAACTGCACCATCAGAAGACCCAGGATTGGGAGGTAACAAATACGGGCTTAACGTACGATTCCTCTCGGCATGCAAATCCTTTACAAGGCGGTAACTTTGATGTTCCGCCATCAGTTTTAGTCCATCAGGGCTTTTCCTCCAACCAACAGAGTGGACAAAGCAGAGATCACAGTTTGAATGGAAAAGCTATTTTCTCCATGGGAGAAGGCCTGGAAAGAGGTAATTTCCAAAATGCTGGTCAACACCTCAATAACCTTCTTGTTGACAATTCAATTAGGGTTAAGACTGAGAGAATTCCTGATGCAAGCTCCCAGACTAACCTCTTCCCTGAGCATTATGGGCAGGAGGATCTTATGAGTGCACTTTTTAAACAGCAGGAAGGCATTGGACCATCTGAGAATGAGTTTGACTTTGATGGATATTCTCTGGACAACATTCCTGTGTAG 2040 0.4549 MNHSCNGKGSMMSTVVMKSSGEAVSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAEKALTLLRERKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVLKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDTEQSGSAEEGGDRQPRPSDDADYSSSANEGSWRNSKKRRDDEEEGDERDDSSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHPNNLNNSFLGTQDASFGTISSINGIDLQTLAVAGQLPAQSLATLQAAGLGRSNTKAGVHMPLMDQRNLFSFENPRLRFGEGQQHHLSNSKPMNLLHGIPTNMEPKQLANLHQPTQSLGNLNMRVNGPASQNNPLLMQMTQSQPRGQMLSENNAPRVSRLPNPLGQPNVSNGISDGLLGRNGIAGSNRPPAYNPVPQNSSLFNFPMNQTTDMSINSFPLGSTPGISSVTSKGSFQDEVTSGIKGSVGFPSYDIFNELHHQKTQDWEVTNTGLTYDSSRHANPLQGGNFDVPPSVLVHQGFSSNQQSGQSRDHSLNGKAIFSMGEGLERGNFQNAGQHLNNLLVDNSIRVKTERIPDASSQTNLFPEHYGQEDLMSALFKQQEGIGPSENEFDFDGYSLDNIPV* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1330 679 ProSiteProfiles Response regulatory domain profile. 33 148 IPR001789 GO:0000160
Lja4g1330 679 MobiDBLite consensus disorder prediction 189 210 - -
Lja4g1330 679 MobiDBLite consensus disorder prediction 154 176 - -
Lja4g1330 679 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Lja4g1330 679 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Lja4g1330 679 Gene3D - 32 209 - -
Lja4g1330 679 SUPERFAMILY CheY-like 31 155 IPR011006 -
Lja4g1330 679 Pfam Response regulator receiver domain 34 142 IPR001789 GO:0000160
Lja4g1330 679 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Lja4g1330 679 Gene3D - 210 272 - -
Lja4g1330 679 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 651 - -
Lja4g1330 679 PIRSF RR_ARR_type-B 14 671 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lja4g1330 679 SMART REC_2 32 144 IPR001789 GO:0000160
Lja4g1330 679 CDD REC_typeB_ARR-like 34 148 - -
Lja4g1330 679 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Lja4g1330 679 MobiDBLite consensus disorder prediction 154 210 - -
Lja4g1330 679 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 651 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1330 Lja-Chr4 11887840 11892786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1330 67 679 Response Regulator Gene Family AT3G16857 50.232 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lja4g1330 Response_reg 5.6e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1330 - K14491 gmx:100814930 1144.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1330 4 11887840 11892786 Lja4g1330 4 11887840 11892786 ECH
Lja4g1330 4 11887840 11892786 Lja6g2284 6 51809881 51814238 PCT