Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1322 ATGGCTTCAACACCAGACATCAGAGGGATTCTCACCGCCTTCAATCCTTCTCTCGACTTGTTCGCCGTCACCGCCGGCGACGGCCGCATCAAGATATGGGATACTCTGAAGGGTCAGCTCCAGAACGAGTTTGCAGATATCACTTCAACTCATGCAGCTACTATCGCCTTAAAGGGCCATCTTTCTGTTGATTACACTTGCATCCACTGGTTTTCTTTTGAAAGAAAGAGGAAAAGGAAGCATACTTCCTCATTGTTGGTGCTTGGAACGGGTAGCGGTGATGTTTTAGCACTCGATGTAGCTGCTGGTCAATTGGCTTGGAGAATTGCTGACTGTCATCCTGGAGGTGTGAGAGCCATTTCATCTTCGGCAAATGGATCGAGCATTTATACTGCTGGTGCAGATGGAATGGTGTGCGTGATCGATTTTATGTCTGGAAATCTGTTGGAGAAATTTAAAGCATCCACGAAGGCAGTATCTTGCATGTCTGTTTCTTCGGATGGGAAGACGTTAGCTACTGCTTCAGCACAGTTGAAGATTTTTAACTGTTCTAATCACAAAAAGATTCAAAAGCTATCTGGTCATCCTGGACCTGTCAGGTGTATGGTCTTCACTGAAGATGACAAGTATATCCTCTCATCTGCTGTTGGTGAAAGATATGTTGCTGTTTGGAGGGTAGATGGTGCTAAAAAGCAGTCAGCTAGTTGTGTTCTTGCAATGGAGCACCCTGCTGTCTTTCTTGATAGCAGGTGCATTGATAGAGGGGAAGACGATGAGGCTGGCATTTGTGTTTTGGCCATCTCAGAAGTTGGTCTTTGTTATTTATGGTTTGGAAATAGTATTGAAGAATTACGTGATGCAAAGCCCACAAAAATATCATTATCTTTAGAAGACATATCCTCTAGAAATTTTAAGGGAGCACTGCCTGCAATATATGCTGCAAAATTACAAGGCATCCAAAAGCCGGCCTCTGGGCAGGTTTTTCTTGTACATGGGTCGCTTGTAAAACCATCTTTTCAAAAAATTCTACTGCACTCCGGTACAGACATAAAGCTGAATGTCTCTCATGATGGTGTTCTTCTTCCAACGAGTCAAGTTCTTGCCAAAACTAAGAAGGGGACAGGTGTACAAAGAGTAACAGCGCTAGACCGTGCTAATGCTGAGGATGCTTTGCTTCCTATTCCTAAGGTTTTCGATTCTCATGAGAAAGAGGAAGAATTTCAAGATTTTTTTGAGAAGGATGTAATACATGATTCGCTTAGAAGCAGTAAAGCTGACTTCCTTGAGATAGAAGATGATATGGTTCAAGATGAGATTGATGTAACTTGCATGGAGGACCGGATGAGATCACTAGGGATGCTTAAAAGTGAAAGTGATTGTGCATCAAACTTTGAACTTTGTTCTTCATTGTTGAAGGGTATTGATCTCGAAGCTACTCTTCCAATGAAAAAGATAAGAGCAGCTGTTTTGTCTATGGTGCCAAGTGAAGTATTCAAACTACTGGAAGTGTTGCTGGCTACATGGCAATCAAGGTCATCTAGTGGAAAGTATGTTCTTCCATGGATATATAGCATATTAGTAAATCATGGTCACAATATTATTGCTCAGGAATCTGGGCCACGTCTGCTTGATTCCTTACACAAGATTACAAATTCTAGAGGGTGTGCGCTTCAGCCTTTATTACAATTATCAGGTCGTCTGCAACTGGTGACATCACAGATTGACAAGGCTTCTCAGACAATAAGTCATTTGGTGCATGATCCCCAAACAGAAGAAAGTGGAGATGAGGATGAATACTATCGTGAGGAAGAAGAAGATGCATCTGAAATAAGTAGCGATGATGAGGCTTGA 1851 0.423 MASTPDIRGILTAFNPSLDLFAVTAGDGRIKIWDTLKGQLQNEFADITSTHAATIALKGHLSVDYTCIHWFSFERKRKRKHTSSLLVLGTGSGDVLALDVAAGQLAWRIADCHPGGVRAISSSANGSSIYTAGADGMVCVIDFMSGNLLEKFKASTKAVSCMSVSSDGKTLATASAQLKIFNCSNHKKIQKLSGHPGPVRCMVFTEDDKYILSSAVGERYVAVWRVDGAKKQSASCVLAMEHPAVFLDSRCIDRGEDDEAGICVLAISEVGLCYLWFGNSIEELRDAKPTKISLSLEDISSRNFKGALPAIYAAKLQGIQKPASGQVFLVHGSLVKPSFQKILLHSGTDIKLNVSHDGVLLPTSQVLAKTKKGTGVQRVTALDRANAEDALLPIPKVFDSHEKEEEFQDFFEKDVIHDSLRSSKADFLEIEDDMVQDEIDVTCMEDRMRSLGMLKSESDCASNFELCSSLLKGIDLEATLPMKKIRAAVLSMVPSEVFKLLEVLLATWQSRSSSGKYVLPWIYSILVNHGHNIIAQESGPRLLDSLHKITNSRGCALQPLLQLSGRLQLVTSQIDKASQTISHLVHDPQTEESGDEDEYYREEEEDASEISSDDEA* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1322 616 MobiDBLite consensus disorder prediction 580 616 - -
Lja4g1322 616 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 11 228 IPR011047 -
Lja4g1322 616 Pfam WD domain, G-beta repeat 13 34 IPR001680 GO:0005515
Lja4g1322 616 Pfam WD domain, G-beta repeat 188 224 IPR001680 GO:0005515
Lja4g1322 616 ProSiteProfiles Trp-Asp (WD) repeats profile. 192 234 IPR001680 GO:0005515
Lja4g1322 616 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 43 IPR001680 GO:0005515
Lja4g1322 616 Pfam Dip2/Utp12 Family 481 571 IPR007148 -
Lja4g1322 616 SMART WD40_4 102 142 IPR001680 GO:0005515
Lja4g1322 616 SMART WD40_4 145 182 IPR001680 GO:0005515
Lja4g1322 616 SMART WD40_4 185 225 IPR001680 GO:0005515
Lja4g1322 616 SMART WD40_4 4 34 IPR001680 GO:0005515
Lja4g1322 616 MobiDBLite consensus disorder prediction 591 616 - -
Lja4g1322 616 Gene3D - 11 295 IPR015943 GO:0005515
Lja4g1322 616 PANTHER OS03G0300300 PROTEIN 4 615 - -
Lja4g1322 616 PANTHER OS03G0300300 PROTEIN 4 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1322 Lja-Chr4 11793306 11803961 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1322 113 224 U-box Gene Family AT2G33340 27.586 8.72e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1322 K14546 - gmx:100815458 926.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1322 4 11793306 11803961 Lja4g1322 4 11793306 11803961 ECH