Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1318 ATGGGACAAGAATCAGATTCCAAGGCCAAGTTGGTATCAGACATTTGCTCCATTTCCACGCGTTCCGCGGTGTGTGCTCATAGGATTCTCTCTAACACAGACAAGGCAAAATTCATTGACTGGTATTGCATTCTTGGAGTGGAAGAAAATGCAGGGGTAAATGCCATTCGCAAGCGTTACCATAAACTAGCCTTGCAACTTCATCCTGACAAGAATAAACATCCAAAGGCTGAAATTGCTTTCAAGCTTGTTTCTGAGGCATACACATGTCTATCTAACACAGCAAAGAGAAAGCCCTTTGACTTGGAAAGGTGTAAGCATTTCTGCTTTGAGTGCAGAAGAAACCCTTATACAACCGGCAATGTCCCTAGCAGCTCCAATGGTTCAGTTCTTAAGGCATGGAGTATTATCAGCAGGTCAAGATCTTTTAAACTTTGGAGAAACATTAAGGAGATGAGGGAGAGATTCAAGGAGGAGGCTAAGGTGGTAGAGAACTGTATGCGAACAAATTCAATGTCAAGGAAGGAATCTCCACTCTCCAATCCGGTTGCCTATCTACAAAGAAGCAAGTCAATGCATAGATTTGACAAAGAAACCCCTGTTTTCAATCCATCAGATTATTTGTACCAAGGCTACCCTCATCTGAGGGAACATGTTTTCAAAAATTCTTCAACATTTTGGTACTTGCAGACAACTAGTATGCTGCACAGACATAATAGAGGAGCGCAGCATGCCTCCCCTGTTTTTGAAGGCAGAGCAAGGAGCACGTTTGCAAGCATATATGCTTTTGTCCCATCATGA 801 0.427 MGQESDSKAKLVSDICSISTRSAVCAHRILSNTDKAKFIDWYCILGVEENAGVNAIRKRYHKLALQLHPDKNKHPKAEIAFKLVSEAYTCLSNTAKRKPFDLERCKHFCFECRRNPYTTGNVPSSSNGSVLKAWSIISRSRSFKLWRNIKEMRERFKEEAKVVENCMRTNSMSRKESPLSNPVAYLQRSKSMHRFDKETPVFNPSDYLYQGYPHLREHVFKNSSTFWYLQTTSMLHRHNRGAQHASPVFEGRARSTFASIYAFVPS* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1318 266 SUPERFAMILY Chaperone J-domain 32 103 IPR036869 -
Lja4g1318 266 SMART dnaj_3 39 96 IPR001623 -
Lja4g1318 266 CDD DnaJ 40 93 IPR001623 -
Lja4g1318 266 Gene3D DnaJ domain 39 165 IPR036869 -
Lja4g1318 266 PANTHER BNAC03G44070D PROTEIN 4 255 - -
Lja4g1318 266 Pfam DnaJ domain 40 101 IPR001623 -
Lja4g1318 266 PRINTS DnaJ domain signature 42 60 IPR001623 -
Lja4g1318 266 PRINTS DnaJ domain signature 76 96 IPR001623 -
Lja4g1318 266 PRINTS DnaJ domain signature 60 75 IPR001623 -
Lja4g1318 266 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 4 255 - -
Lja4g1318 266 ProSiteProfiles dnaJ domain profile. 40 104 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1318 Lja-Chr4 11760897 11762226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1318 40 101 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 42.424 8.27e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1318 - - gmx:100801809 422.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1318 4 11760897 11762226 Lja4g1318 4 11760897 11762226 ECH
Lja4g1318 4 11760897 11762226 Lja6g2270 6 51577711 51579233 PCT