Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1315 ATGTCTCGTTGCTTAAGTGATTGCATAGAGGAATACAAAGAAGCCAGAGAGAATTTGCAGGACTCAGCAGAAGCACTTGCAGAAGGAGATTATGACAAGGTAGATACATTGGTGTCTGCTGCTATGTCAGATGCAGAAACATGTGAGGATGGCTTCAAGGAGGTGTTCATTTATGATGGCAATAAGGATTATTCCAATCCTTCTCTTACTAAGCGCAACAGTTACTTCTCTGAACTGTGTAGTAATGCTCTGGCCATCACAAAATTATTAGCCCAGGATTTTTGTGGAAACGCTGTTCTATATATATCTACATATATATCTATGATGGCTGTTTGCAGGAAATTCAAAAGAAATGTGTCTCCATTAGTTATCAGGGCTCAGCTTCTGGATTTTGCAGTTTCTCTGTTGCCGGGTTTAAATGAGGAGTGTATTGCTTTATTATTTCAAGCAATAAAGCCAGCATTTCAGCGATTATTCTTTACAGGATGTTGA 492 0.3902 MSRCLSDCIEEYKEARENLQDSAEALAEGDYDKVDTLVSAAMSDAETCEDGFKEVFIYDGNKDYSNPSLTKRNSYFSELCSNALAITKLLAQDFCGNAVLYISTYISMMAVCRKFKRNVSPLVIRAQLLDFAVSLLPGLNEECIALLFQAIKPAFQRLFFTGC* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1315 163 Coils Coil 5 29 - -
Lja4g1315 163 PANTHER PECTINESTERASE INHIBITOR-LIKE 2 91 - -
Lja4g1315 163 Pfam Plant invertase/pectin methylesterase inhibitor 3 86 IPR006501 GO:0004857
Lja4g1315 163 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 92 IPR035513 -
Lja4g1315 163 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 3 90 IPR035513 -
Lja4g1315 163 TIGRFAM PME_inhib: pectinesterase inhibitor domain 3 90 IPR006501 GO:0004857
Lja4g1315 163 PANTHER OS05G0360900 PROTEIN 2 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1315 Lja-Chr4 11736954 11740746 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1315 5 97 Carbohydrate Esterase AT1G53830 29.703 1.61e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1315 - - lja:Lj4g3v2678570.1 197.593