Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1312 ATGTGTGGAGGTGCAATCATCTCTGATTTCATAGATGAATACCCTAACCGTGGCCGGAGATTAACCACTGGTGACCTCTGCTATGACCTTGATACTCTCTCCGACGTCTTCACTTCTTCTTCCACTCACCAACCACCCTCTTTCCACTTTGATGATGTAATTCCAATTCCAAACAACCAAGGGGTGGCATCATCATGTGAGGAGAAGAAAAGAGTGATGATTGAAGTTGAAGAAAAAGGAAGCGATGAGAAGAGTGGAGAGAGTGAGGAGGGTATTAAGAAGGGTAAACGGGTTCGGAAGAATTTGTACAGAGGAATCAGACAAAGGCCATGGGGAAAGTGGGCTGCTGAGATCAGAGACCCACGTAAGGGTGTGCGTGTTTGGCTCGGAACCTTCAACACCGCCGAAGAAGCTGCTCAAGCTTACGACGATGCTGCCAAGCGCATCCGCGGAGACAAGGCCAAGCTCAACTTTCCCGACAAGCCCGAGCCCAGTGAGCCGGTGACGATGAAGGCCCAGCCGGATGAGGTGAAATCATTCGTGGGCTTGGACCCTGAGGCACAGGCTCAGGTGGTTAGTGGAGAGTGGGACTCGCTATTCTACCCGGACCTGTGGATGCTGGACGACGTGGTTATGCCCAACCGTCGTCATCAGTTGATCTCCCAAGCATTTCCAGAATGA 681 0.514 MCGGAIISDFIDEYPNRGRRLTTGDLCYDLDTLSDVFTSSSTHQPPSFHFDDVIPIPNNQGVASSCEEKKRVMIEVEEKGSDEKSGESEEGIKKGKRVRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAQAYDDAAKRIRGDKAKLNFPDKPEPSEPVTMKAQPDEVKSFVGLDPEAQAQVVSGEWDSLFYPDLWMLDDVVMPNRRHQLISQAFPE* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1312 226 SUPERFAMILY DNA-binding domain 102 160 IPR016177 GO:0003677
Lja4g1312 226 Pfam AP2 domain 103 151 IPR001471 GO:0003700|GO:0006355
Lja4g1312 226 ProSiteProfiles AP2/ERF domain profile. 102 159 IPR001471 GO:0003700|GO:0006355
Lja4g1312 226 SMART rav1_2 102 165 IPR001471 GO:0003700|GO:0006355
Lja4g1312 226 PRINTS Ethylene responsive element binding protein signature 125 141 IPR001471 GO:0003700|GO:0006355
Lja4g1312 226 PRINTS Ethylene responsive element binding protein signature 103 114 IPR001471 GO:0003700|GO:0006355
Lja4g1312 226 PANTHER DNA-BINDING DOMAIN 1 177 IPR044808 GO:0003700|GO:0009873
Lja4g1312 226 CDD AP2 103 160 IPR001471 GO:0003700|GO:0006355
Lja4g1312 226 Gene3D AP2/ERF domain 102 160 IPR036955 GO:0003700|GO:0006355
Lja4g1312 226 PANTHER EREBP TRANSCRIPTION FACTOR 1 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1312 Lja-Chr4 11716343 11717939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1312 1 160 AP2-EREBP Transcription Factor Family AT3G16770 50.299 1.11e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja4g1312 AP2 2.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1312 K09286 - gmx:100779626 176.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1312 4 11716343 11717939 Lja4g1312 4 11716343 11717939 ECH
Lja4g1312 4 11716343 11717939 Lja6g2263 6 51518967 51520906 PCT