Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1311 ATGAATTCCAATTACGGCAGATCCAATTCCAACCCACAAAAAACAGCTTCATCTTCTCCCTCCGTTTCACTCAACAACTTCAATTTCGATTTTGATCTCGGCATCGGATCCAATCGACCCAAATCCCTAATCGATCAGAAAACCCCCACCTCCAACTCCAACTCCAACCCTTCCTATTCCTATTCCAATCCCAATTCCTCCACCCAATCCAAGAAACCATCATGGACCCACCAACCCGCTCCGGCCGCGTTACCGGGTCAACCACCGTCCATGGCCGGAGACATCTTCGGCAAGAGCTGGGGATCCGCTCAACCTTCTGCTCCAACCATTGGAATCGTCAACAAAAACCCTAACCTCTTCGGTGATTTGGTTAGCTCTGCTTTGGGACAAGGTTCCAAGTCTTCTTCTGGTAGCACCAATGTTCCTCTGAAAAATGCAGCTTCTACAACCAAAACCACCTCATTCTCCATGGGGAATATGGCCAATTCATTGCCCAAAACTGGTAATGCTCCTCAGAGTAGCGGTTCTACTTGGGGATCTTCTTCTGGGAGTTTTGGTGTGAATAAGAGTTCCAATCTTGGGGGTGCTTCAATTGGAAGTGGAATCAATTCTGGTAACAAGGATCCATTTAGTTCTTTGGGTGTTGGGATTGGAACCAAGCAATCTTCTTCTGCTTCAGCTAGTCTTAATTCAGCTCCTAAAGCTAAGAAGATTGAGAAAGATGATGATGGTTTTGGAGATTTTCAGAATGCTGCTTCCAAATCAAGCTCTGCTGGTTTTACATCGAGTGGTAATGCGGGGATTAATTTTGATTTTACTGGATCAACCGCTTCATCGAATCGGTCTCCTGCACAGGCATCAGGTGGTGGTGATCCAATGGACATGTTCTTCACATCTTCATCAGGTGGAGGTGGTGCTGCGGCCTCTCAGGGATTTGGAGGACAGGCCTCTTCTGAAATGGATGATTGGGGTATGGATTCTGAGTTTGGCGGCGGAGGGCATGATGGGGGTGGCACAACTACTGAGCTGGAGGGGCTTCCACCACCTCCTGCTGGGGTATCAGGTTCTGCTGCCAAAGGCAAGGGGATGGACAATTACAAGCAGGGGCAGTTTGCTGATGCTATTAAGTGGCTTTCATGGGCTGTCATTCTTCTAGAGAAAGCTGGGGATGATGCAGGCTCAGTGGAGGTTTTGTCATGCAGGGCTTCATGTTACAAAGAAGTTGGGGAGTATAAAAAGGCAGTGGCGGATTGTACAAAGATTCTTGAAAACAATGAAACCAATGTATCTGTCCTGGTACAGCGTGCTCTCCTGTATGAGAGCATGGAAAAGTACAAACTTGGCGCGGAAGACCTGAGGAATGTGCTGAAGATTGATCCCAGTAATAGGGTTGCTAGAAGTACTATTCACCGATTGGTTAAGATGGCCGATTAA 1434 0.4742 MNSNYGRSNSNPQKTASSSPSVSLNNFNFDFDLGIGSNRPKSLIDQKTPTSNSNSNPSYSYSNPNSSTQSKKPSWTHQPAPAALPGQPPSMAGDIFGKSWGSAQPSAPTIGIVNKNPNLFGDLVSSALGQGSKSSSGSTNVPLKNAASTTKTTSFSMGNMANSLPKTGNAPQSSGSTWGSSSGSFGVNKSSNLGGASIGSGINSGNKDPFSSLGVGIGTKQSSSASASLNSAPKAKKIEKDDDGFGDFQNAASKSSSAGFTSSGNAGINFDFTGSTASSNRSPAQASGGGDPMDMFFTSSSGGGGAAASQGFGGQASSEMDDWGMDSEFGGGGHDGGGTTTELEGLPPPPAGVSGSAAKGKGMDNYKQGQFADAIKWLSWAVILLEKAGDDAGSVEVLSCRASCYKEVGEYKKAVADCTKILENNETNVSVLVQRALLYESMEKYKLGAEDLRNVLKIDPSNRVARSTIHRLVKMAD* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1311 477 MobiDBLite consensus disorder prediction 302 316 - -
Lja4g1311 477 PANTHER OS03G0340700 PROTEIN 1 477 - -
Lja4g1311 477 SUPERFAMILY TPR-like 357 469 IPR011990 GO:0005515
Lja4g1311 477 MobiDBLite consensus disorder prediction 221 243 - -
Lja4g1311 477 MobiDBLite consensus disorder prediction 41 76 - -
Lja4g1311 477 ProSiteProfiles TPR repeat profile. 429 462 IPR019734 GO:0005515
Lja4g1311 477 Gene3D Tetratricopeptide repeat domain 355 476 IPR011990 GO:0005515
Lja4g1311 477 MobiDBLite consensus disorder prediction 154 183 - -
Lja4g1311 477 MobiDBLite consensus disorder prediction 273 360 - -
Lja4g1311 477 MobiDBLite consensus disorder prediction 35 94 - -
Lja4g1311 477 MobiDBLite consensus disorder prediction 1 23 - -
Lja4g1311 477 SMART tpr_5 395 428 IPR019734 GO:0005515
Lja4g1311 477 SMART tpr_5 355 388 IPR019734 GO:0005515
Lja4g1311 477 SMART tpr_5 429 462 IPR019734 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1311 370 472 Calmodulin-binding Proteins AT3G25230 31.132 1.34e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1311 - - vun:114178472 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1311 4 11710517 11715004 Lja4g1311 4 11710517 11715004 ECH