Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1306 ATGACCACTGCATTTAACAGCAACCAGGAGAGGAAGAAGAAGTATGCCATTCTCGGCGTCTCTTCTATCTTGCTTGTGGCCATGGTAGCTTGCGTGGCCGTCGGCATAAACAGCGGCGCCGAAGTTGGCAGCGAAGGATCAAGTGACAACCATGTTACAAAATCTCAAAAGAACGTCATATGCGATTCAGTGGAATACAAAGAGACATGCGAGAAGAGTCTTGCCAAGGCCTCAAACGAGACCTCAGACATGAAGGAGTTGATCAAAGCCGCATTCACCGCGACCGCAGATGAGCTCCAAAACCAGATAGTAAACTCCACCCTCTACCAAGAGTTGGCCAAGGACAACATGACAAGACAAGCCATGGACATCTGCAAGGAAGTCCTAGGTTATGCTGTTGATGACATTCACAAATCTGTCCACACGTTGGACAAGTTTGATCTTAGCAAGCTAGAAGAATACGCCTACGACCTCAAGGTTTGGCTTGCCGGTACCCTCTCCCACCAACAAACATGCTTGGACGGGTTTGTGAACACCACCACCAACGCTGGGCAAACCATGGCCAAGGTTCTCAACACCTCTTTGGAGCTCAGCAACAACGCGTTGGACATAGTGAACGGTGTGTCTAGTCTTTTCAAGGGTCTTAACTTGACAACTTTCACCACAAACACCCCCACCGTCGCCGCCAACAGAAAGCTTCTCGCTGAGGATGGTTTCCCTTCATGGATGGGCCAAGCTCAGAGGGAGCTCCTTCAGGCTGGGCCTGGGAATGTTAAGGCTGATGTGATTGTGGCTCAAGATGGTAGTGGCCAATTCACAACACTTACTGAGGCACTTAAACTTGTTCCTAAAAAGAACAGGAAGCCTTTTGTGATTTATGTCAAGGCTGGTATCTACAAAGAGTATGTTGAACTTGATAAGAAAAAGGCCCATGTCACTATCATCGGAGATGGTCCCACAAAGACCAGATTCACCGGCAGCAAGAACTATGTTGATGGTGTGCAAACCTACTTCACCGCGACCTTCAGTGTGAACGCTCCTGCCTTCATGGCAATGCACGTTGGGTTCGAGAACTCGGCTGGAGCAGAGAAGCACCAAGCTGTGGCACTGAGGGTGACAGCCGACAAGGCAGTGTTCTATGACTGCCATATGGATGGATTCCAAGATACCTTGTACGTCCAGTCCCAGCGCCAATTCTACCGTGATTGTGTAGTCTCTGGCACCGTCGACTTCGTCTTTGGTGACGCTGTGGGAGTTTTCCAGAAGTGCAAGTTCATCGTGAAGAAGCCCCTGGAGAACCAGCAATGCATGGTGACGGCTGGCGGCAGATCCAAGATCGACAGCCCCAGCGCACTGGTGTTCCAAAGCTGCCACTTCACCGGTGAGCCCGGAATGAACCTCGTGACCCCAAAGATCTCGTACCTCGGAAGACCATGGAGGTTGTACTCTAAGGTTGTGATCATGGACTCCCGCATCGATGACATTTTCGTACCAGAAGGTTACATGGCGTGGATGGGAAGTGCCTTCAAGGACACATGCTCCTACTATGAGTACAACAACGTGGGACTTGGTGCTAACACTATTGGTCGTGTCAAATGGCCAGGTGTTAAGGTCATCACTCCTCTTGAGGCTGATGATTTCTATCCAGGAAGGTTTTACGAAATCGCTAACTCAACTCAACGTGATGCTTGGATCCTTCATTCCGGTGTGCCCTATTCCCTTGGCCCACTTCCTCCTCCTATTGGCTCAAACCCCAAGCCCTAA 1764 0.5017 MTTAFNSNQERKKKYAILGVSSILLVAMVACVAVGINSGAEVGSEGSSDNHVTKSQKNVICDSVEYKETCEKSLAKASNETSDMKELIKAAFTATADELQNQIVNSTLYQELAKDNMTRQAMDICKEVLGYAVDDIHKSVHTLDKFDLSKLEEYAYDLKVWLAGTLSHQQTCLDGFVNTTTNAGQTMAKVLNTSLELSNNALDIVNGVSSLFKGLNLTTFTTNTPTVAANRKLLAEDGFPSWMGQAQRELLQAGPGNVKADVIVAQDGSGQFTTLTEALKLVPKKNRKPFVIYVKAGIYKEYVELDKKKAHVTIIGDGPTKTRFTGSKNYVDGVQTYFTATFSVNAPAFMAMHVGFENSAGAEKHQAVALRVTADKAVFYDCHMDGFQDTLYVQSQRQFYRDCVVSGTVDFVFGDAVGVFQKCKFIVKKPLENQQCMVTAGGRSKIDSPSALVFQSCHFTGEPGMNLVTPKISYLGRPWRLYSKVVIMDSRIDDIFVPEGYMAWMGSAFKDTCSYYEYNNVGLGANTIGRVKWPGVKVITPLEADDFYPGRFYEIANSTQRDAWILHSGVPYSLGPLPPPIGSNPKP* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1306 587 Pfam Pectinesterase 261 552 IPR000070 GO:0030599|GO:0042545
Lja4g1306 587 ProSitePatterns Pectinesterase signature 1. 286 305 IPR018040 -
Lja4g1306 587 PANTHER PECTINESTERASE 8 579 - -
Lja4g1306 587 SMART PMEI_2 52 204 IPR006501 GO:0004857
Lja4g1306 587 Gene3D - 258 577 IPR012334 -
Lja4g1306 587 PANTHER PECTINESTERASE 8 579 - -
Lja4g1306 587 TIGRFAM PME_inhib: pectinesterase inhibitor domain 44 207 IPR006501 GO:0004857
Lja4g1306 587 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 60 207 IPR035513 -
Lja4g1306 587 SUPERFAMILY Pectin lyase-like 259 574 IPR011050 -
Lja4g1306 587 CDD PMEI-like_3 60 210 - -
Lja4g1306 587 Pfam Plant invertase/pectin methylesterase inhibitor 60 204 IPR006501 GO:0004857
Lja4g1306 587 ProSitePatterns Pectinesterase signature 2. 405 414 IPR033131 -
Lja4g1306 587 Gene3D Invertase/pectin methylesterase inhibitor family protein 58 208 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1306 Lja-Chr4 11695507 11697600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1306 1 577 Carbohydrate Esterase AT3G05610 42.955 5.45e-176 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1306 K01051 - gmx:100820068 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1306 4 11695507 11697600 Lja4g1306 4 11695507 11697600 ECH
Lja4g1306 4 11695507 11697600 Lja6g2250 6 51435160 51437636 PCT