Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1287 ATGGAGACGACTCACTTCAATCACAGTACTCTCTTCGACCGCCGCCCCTTCCTCAAATCCAAAGCCCCCGCCGTGAGATGGGTCAAAGAATGGGTTCCTCAAGATGTTCTTGCGACCGGGGGGAAATGCATGCTCTTAAGATGGGTAGCAGAGGATACCTTAAAGGCCTCGAAAGAAAAGGAAAATGAACCTTCGGGACCTGAGCCAGAACCTGAGCCAACTACTGAAGTACTCTTTCTTTGCAGCTATGAAGGCTGTGGAAAGACATTCATAGATGCTGGTGCTTTGAGGAAGCATTCTCACATCCATGGAGAGAGGCAATTCATTTGCCATTACGAGGGATGTGGAAAGAAATTTCTAGACAGCTCAAAGTTAAAAAGACATTTCCTTATTCATACTGGGGAGAGGGATTTTGTATGTCCCCATGAAGGCTGTGGTAAGGCCTTCTCCTTGGATTTCAACCTGAGGTCTCACATGAAGACACATTCACAAGAGAACTATCATATATGCCCATACCCAGATTGTGGAAAGAGATATGCTCATGAATACAAGCTAAAGAATCATGTTGCTTCTCATCATGAAAAGAATCCCTCACTGGAGTTGCCAAAGTATACTACTCCTCCTTCGGAGAAGCAAACAAAAACAACTAAACCATCTGGGGGAGCTTACACTTCAGCATCATCTGATCGCCCATATGCATGTCCTTATGAAGGGTGTGAAAAAGCTTATATTCATGAATACAAGCTTAAGCTCCATTTGAAGAGGGAGCATCCTGGCCACATGTCTGAGGAAAATGCTGTGCATGCTCTGGCTAATGCTGACAATGAAATGGATGAAGCAAGTGACCAAGATGCCTATGGTGGTGTGAAACGGTCAAATGGTAAAAGTCAGAAGCAAAGTAAGCCCAAGCCAAACTTGAAGCTTCCACCTTCCAAGATGGCACGAAAAGGGTCAGCTCCAACTCCAAGTGCCCCTTTAAATGTGATTAAAAAACCTTGGCCAGTGAAACAAGAAACTTATGATGAAGACAGCGAAGAAACTGAGGAGGATCGTGATAATGTTGAAGATGGTTGGAGATATGCTGGAAACAACGAAGATGACGATGAGGAAACAGAAGATGAAGACTGA 1128 0.4441 METTHFNHSTLFDRRPFLKSKAPAVRWVKEWVPQDVLATGGKCMLLRWVAEDTLKASKEKENEPSGPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQFICHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHVASHHEKNPSLELPKYTTPPSEKQTKTTKPSGGAYTSASSDRPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSEENAVHALANADNEMDEASDQDAYGGVKRSNGKSQKQSKPKPNLKLPPSKMARKGSAPTPSAPLNVIKKPWPVKQETYDEDSEETEEDRDNVEDGWRYAGNNEDDDEETEDED* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1287 375 MobiDBLite consensus disorder prediction 290 304 - -
Lja4g1287 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 108 IPR013087 -
Lja4g1287 375 MobiDBLite consensus disorder prediction 202 226 - -
Lja4g1287 375 ProSitePatterns Zinc finger C2H2 type domain signature. 234 257 IPR013087 -
Lja4g1287 375 SMART c2h2final6 138 162 IPR013087 -
Lja4g1287 375 SMART c2h2final6 168 192 IPR013087 -
Lja4g1287 375 SMART c2h2final6 108 132 IPR013087 -
Lja4g1287 375 SMART c2h2final6 232 257 IPR013087 -
Lja4g1287 375 SMART c2h2final6 79 103 IPR013087 -
Lja4g1287 375 Coils Coil 263 283 - -
Lja4g1287 375 Gene3D Classic Zinc Finger 205 271 - -
Lja4g1287 375 ProSitePatterns Zinc finger C2H2 type domain signature. 110 132 IPR013087 -
Lja4g1287 375 SUPERFAMILY beta-beta-alpha zinc fingers 119 171 IPR036236 -
Lja4g1287 375 Pfam Zinc finger, C2H2 type 138 162 IPR013087 -
Lja4g1287 375 Gene3D Classic Zinc Finger 136 163 - -
Lja4g1287 375 Gene3D Classic Zinc Finger 79 104 - -
Lja4g1287 375 PANTHER BNAA03G13270D PROTEIN 5 374 - -
Lja4g1287 375 SUPERFAMILY beta-beta-alpha zinc fingers 227 255 IPR036236 -
Lja4g1287 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 232 262 IPR013087 -
Lja4g1287 375 MobiDBLite consensus disorder prediction 277 375 - -
Lja4g1287 375 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 5 374 - -
Lja4g1287 375 SUPERFAMILY beta-beta-alpha zinc fingers 82 132 IPR036236 -
Lja4g1287 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 137 IPR013087 -
Lja4g1287 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 168 197 IPR013087 -
Lja4g1287 375 MobiDBLite consensus disorder prediction 190 229 - -
Lja4g1287 375 ProSitePatterns Zinc finger C2H2 type domain signature. 81 103 IPR013087 -
Lja4g1287 375 Gene3D Classic Zinc Finger 165 197 - -
Lja4g1287 375 Gene3D Classic Zinc Finger 105 135 - -
Lja4g1287 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 138 167 IPR013087 -
Lja4g1287 375 ProSitePatterns Zinc finger C2H2 type domain signature. 140 162 IPR013087 -
Lja4g1287 375 ProSitePatterns Zinc finger C2H2 type domain signature. 170 193 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1287 1 361 C2H2 Transcription Factor Family AT4G06634 63.588 1.58e-147 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja4g1287 zf-C2H2 0.00038 CL0361