Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1269 ATGTACAATCTCATCATGTTCCAGTTTCGTTTTCACCGGCGAAGAGCCCTTCTTCTTCAACTGAAACCCTTCTTCCCCTACCCATTATCAATAGTATCTCACAACTTCTCAACCACTTGTGATTCTTCCGATAAACAATCCTTCACCCTTTCATATCTCACGAACACTTGTGGCTTTTATCCCCAAGCTGCTCTCAAAGCAGCCAAGCGAGTTCGTTTCAACGACGCAAAGAAGCCCGACTCGGTTATCGCCTTCTTCACAAACCACGGTTTCTCCATCTCCCAGACACACAACATCATTCGCAGGGTACCAGAGCTGCTTGTACTCGATTCCACCAAAAAGGTTTTGCCCAAGTTTCAATTTTTAGCCTCCAAAGGTTTTGACATAGTTACCACTGTGACTAGGGCCCCATATTTCCTGCTTAAAAGCCTTGAGAATCACATTATACCTGCATTTGAATTTGTCAGGAGATTCTCTCAATCTGATGAAAAAGCAATGGCTTGTGCACTTTTTGGTTCCATTACCATTAGTCTTGCTCTCATGAAATCAAAAGTACAATTGTTGCTTGATATGGGAGTCACTCCCTCAAACATATACCTTTTGCTTAGAACTTGGCCCTCTCTGCTCAGATGTGCTGACTTGAAGGAGGTTGTGGAGGAAGTCAAGGGATTGGGATTTCATCCCTCCAAAACGCTTTTTGTTGTAGCGTTACAGGCCAAAAGGGGTATATCCAAATCTCTTTGGGATGCCAAAGTCGATGCCTTTAAGACATGGGGCTGGTCTGAAGATGCTATTCTGGATGCATTTAGGAGGAATCCCAAGATTATGCTATACTCAATCAAAAAAGTAAATGCAGTGATGAGTTTTTGGGTAGGTCATCTTGGTTGGGACCCTTCAGTACTTCAAGCCGTGCCATCACTTTTTGGATATAGTTTGGAGAAAAGGCTTATGCCAAGGGCTTCAGTTGTCCAGTATCTTCTCTCCAGAGGTTTGATGAAGAAGGATGCTAGCTTATATACACCGTTTAAGTATACTGATAAGTTGTTCCTGCAAGAATTTGTGAATTGTTTTGAGGAGGAGGAAACATCTAAGCTACTAAGTCTATATCGGGGAGGACGCTAG 1122 0.4296 MYNLIMFQFRFHRRRALLLQLKPFFPYPLSIVSHNFSTTCDSSDKQSFTLSYLTNTCGFYPQAALKAAKRVRFNDAKKPDSVIAFFTNHGFSISQTHNIIRRVPELLVLDSTKKVLPKFQFLASKGFDIVTTVTRAPYFLLKSLENHIIPAFEFVRRFSQSDEKAMACALFGSITISLALMKSKVQLLLDMGVTPSNIYLLLRTWPSLLRCADLKEVVEEVKGLGFHPSKTLFVVALQAKRGISKSLWDAKVDAFKTWGWSEDAILDAFRRNPKIMLYSIKKVNAVMSFWVGHLGWDPSVLQAVPSLFGYSLEKRLMPRASVVQYLLSRGLMKKDASLYTPFKYTDKLFLQEFVNCFEEEETSKLLSLYRGGR* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1269 373 Gene3D Transcription termination factor 3, mitochondrial 171 362 IPR038538 -
Lja4g1269 373 Gene3D Transcription termination factor 3, mitochondrial 50 170 IPR038538 -
Lja4g1269 373 SMART mt_12 199 227 IPR003690 GO:0003690|GO:0006355
Lja4g1269 373 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Lja4g1269 373 SMART mt_12 266 297 IPR003690 GO:0003690|GO:0006355
Lja4g1269 373 SMART mt_12 298 332 IPR003690 GO:0003690|GO:0006355
Lja4g1269 373 SMART mt_12 97 128 IPR003690 GO:0003690|GO:0006355
Lja4g1269 373 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 39 371 - -
Lja4g1269 373 PANTHER CGI-12 PROTEIN-RELATED 39 371 IPR003690 GO:0003690|GO:0006355
Lja4g1269 373 Pfam mTERF 181 349 IPR003690 GO:0003690|GO:0006355
Lja4g1269 373 Pfam mTERF 84 227 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1269 Lja-Chr4 11272071 11273509 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lja4g1269 mTERF 4.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1269 K15032 - gmx:102666622 306.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1269 4 11272071 11273509 Lja6g2211 6 51093475 51094623 PCT