Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1266 ATGTTCCACTCTCATCGTCTAAGGTTTCTTCTCCATCTCAACACTCTCTGCAAACCTTCTCCAAACCCTAAAATTTCCCCTCTTCTTCATCCAAAACCCTCATCATTATCAATAGTATCTCACAACTTGTTCTCAACCACTTGTGATAAACAATCCTTCACTGTTTCCTACTTCAAAACCAACTGTGGATTCTCACACCAAGCAGCTCTCAAAGCATCCAAGCGAGTTCTCTTCAACGACGCAAACAAACCCGATTCAGTCATCACCTTCTTCACAAACCACGGTTTCACCCTCTCCCAAACACACAACGTCATTGGCAGAACACCAGAGCTTCTTCTCTTCGACCCCACCACAAAGCTTCTGCCCAAGTTTCAATTTCTAGCCTCCAAAGGTGCTTCCCCATCTGACATTGTCACCACTGTAATCAGAAGTCCACGTTTTCTCCGGAAAAACCTCGAAAAGCAAATCGTCCCTGCGTTTGAAGCCATTAGGAGATTCTTCACATCTGATCAGAAAGCAATTGCTTGTGTAATTGCTTGCCCTACTGCTATCAGTGATGATCGCGTTGTTCCGAATTTGAATTTGTTGATTGATTTGGGTGTGTCTCCTTCGAATATTAACAATTTGTTTCGTACTAGGCCCTCTATACTCAGCTCTGGTGATTTGGGAAGTGCTGTGGAGGAGGTCAAGGGTTATGGATTTGATCCTTCGAAAACGCTTTTTAGTGTGGCGTTGTTGGCGAAAAGGGCAATGGCGAAATCCCAATGGGATACTAAAGTTGATGCTTTGAAGAAATGGGGTTGGTCTGAAGATACTGTTGTTGATGCATTTAGGAGGCAACCCAGCATTATGTTAAGGTCTACTGAGAAACTCAATGCAGTGATGAATTTGTGGGTTGATCAGCTTGGTTGGGATACTTCGGCGCTTCTAGCTGCACCGATAATATTTGGATATAGCTTGGAGAAGAGGATTATTCCAAGGGCTTCAGTTGTCAAGTATCTTCTCTCTAAAGGTTTGATGAAGAAGGAAGCTAGCTTAACTACACCATTTGGTTTGACTGATGAGCTGTTCCTGCAAAAGTTCGTGAACTGTTTTGAGAAGGAGGAAACATCTAGGCTGCTAAGGCTGTATCAGGGAGCATGCAAGAGTCTGGCTCTTGGTTAG 1164 0.4373 MFHSHRLRFLLHLNTLCKPSPNPKISPLLHPKPSSLSIVSHNLFSTTCDKQSFTVSYFKTNCGFSHQAALKASKRVLFNDANKPDSVITFFTNHGFTLSQTHNVIGRTPELLLFDPTTKLLPKFQFLASKGASPSDIVTTVIRSPRFLRKNLEKQIVPAFEAIRRFFTSDQKAIACVIACPTAISDDRVVPNLNLLIDLGVSPSNINNLFRTRPSILSSGDLGSAVEEVKGYGFDPSKTLFSVALLAKRAMAKSQWDTKVDALKKWGWSEDTVVDAFRRQPSIMLRSTEKLNAVMNLWVDQLGWDTSALLAAPIIFGYSLEKRIIPRASVVKYLLSKGLMKKEASLTTPFGLTDELFLQKFVNCFEKEETSRLLRLYQGACKSLALG* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1266 387 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 26 380 - -
Lja4g1266 387 PANTHER CGI-12 PROTEIN-RELATED 26 380 IPR003690 GO:0003690|GO:0006355
Lja4g1266 387 Pfam mTERF 256 357 IPR003690 GO:0003690|GO:0006355
Lja4g1266 387 Pfam mTERF 89 293 IPR003690 GO:0003690|GO:0006355
Lja4g1266 387 Gene3D Transcription termination factor 3, mitochondrial 183 370 IPR038538 -
Lja4g1266 387 SMART mt_12 138 169 IPR003690 GO:0003690|GO:0006355
Lja4g1266 387 SMART mt_12 174 202 IPR003690 GO:0003690|GO:0006355
Lja4g1266 387 SMART mt_12 274 305 IPR003690 GO:0003690|GO:0006355
Lja4g1266 387 SMART mt_12 306 340 IPR003690 GO:0003690|GO:0006355
Lja4g1266 387 SMART mt_12 36 65 IPR003690 GO:0003690|GO:0006355
Lja4g1266 387 SMART mt_12 102 133 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1266 Lja-Chr4 11232309 11233631 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lja4g1266 mTERF 8.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1266 K15032 - gmx:102667698 323.939