Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1264 ATGGCTATTTTTGATACTCTGTTGGCAATGACCAATGTAGCATTCTTCTATTCCATCTTGATATGGGTTTTGGTTGATAGTTTGGACGGGCAGAGCAAGGGTAGCTACTTTATATATTCAAAACAGTGGCCAAAACTTTTCACCACCATAACTGTTCTTTGTAATGCTGTTATTTCCCTTTTAAACCTTGCTTTTGTGTTTTATGAATACAGCACTAGGAGAATCGTAGGGTACAACTCATTTTCCTTAGCTCTAACTTGGGTTATGGCCACTGTGGTTTCGTTTTATTCAATGAGGGCTGCACTCAGGGAGAACAACAAAAGGTTCCCCCTTGTTCTAATGCTTTGGTGGTTCTTCGCCACTGTGACAGATATATTCTCATTGTCTTTAGAGCTAGTGAGAAGTGATGAATCTGTTAATTTCTGGATTTTCAACATAGTTGGCATTGTTTCTTTGCCTATGCTGTTACTTCTCTGTTGCAATGTGCTTTATGGAAGGGAGCAAAAGCAAAGTGATGTGGGACAGCAATTGCTTCAGAAAGAGGTGGAATCTCCAAGGGAAGAAACTGAAGAAGAGATTTTCACAGAGGCAAGTTTATGGAGCAAACTCACATTCAGATGGCTGAACCCTATAATCAACAGGGGCAGGGTTCAAACACTTGAGCTTGGTCACATTCCTTCTGTTCCTCATTCTGAAACAGCAGAAAGTGCTACTTCTATGTTACAAGAATCACTTTGCACCTCCTTGACAAAGGCAATAATCTATTCTGTATTGAAGTCATTGGCATTTAATGCAGTTTTAGCAGGTATGTTTTCTTTAATCAGATTTCTACTGATGTACTTCTATTGTGACAGATCAAGCATCCAACATGGGCTGGTTCTTGCATCCGTTTTCTTCCTCTCAAAGACAGTGGAATCATTGAGTCAAAGACAATGCGTCTTTGGAGCTAGCCGGATTGCGATTCGGACGCGTTCAGCCCTCATGGCTCTTGTTTACAACAAATCCCTGTCGATTAAATGTGTTGGACCAACACATGGCAAAATCATAAATTTGATCAATGAGGATGCTGAAAGAATTGGGGACGCCTTTAAGAGGTTTCATGAGATTTTGATGTTTCCGTTTCAGGTTATTACAGCTTTAATAATCTTATACATAAATCTTGGTCCTGCCCCTTCGTTGGCTGCATGTGTTGTCACTCTTCTTGTCATGGTGTGCAGCACACCTTTAACTACTATGCAGAAAAGTTGTCAGTCCAAAATCATGGAAGCTAAGGACTCAAGAATCAAAGTGACATCTGAGACAATGAAAAACATTCGGATTTTGAAAATGCAGTCTTGGGAATGTACATTCTTGCAGAAACTTCTCCAACTTAGGGATATGGAAAGGAGCTGGCTGCAGAAATTCCTCCACACAAAATCAGCCATAGTTTCTCTATTCTGGGCAGCACCGACTCTTGTTTCAATTTTTTCATTTGGTACTTGTTTAATTGTAAAGACAGAGCTAACAACACCTAGGGTTCTCTCCGCTCTAGCAACATTTAAAATTCTACAGGATCCTATCTACAAATTTCCGGACCTGTATTCGATGATTACACAAGCACTAGTCTCCGTTAAGCGAGTCCAGGAATTCCTCATGGAGGAGGACCAAAATGAATTCATGAATAGGCATCCTCCCAAAACAACTTCTGGACTTGCTATTGAAATCAACCCGAGCATGTATTCGTGGGAGACAAACAATCAAACTAACAGAAAACCGACAATTCAGATTGTGGAAAAATTAATCATACAAAAAGGTATGAAGGTAGCTGTTTGTGGGCCAGTAGGGTCGGGAAAATCAAGCTTGCTGTCTTGTATGCTTGGCGAGATTCCACTAGTCTCAGGGGAACCAACCAACATATATGGGACTACAAGCTATGTAGCCCAAAGTGCATGGATTCAGTCCGGAACAATAAGAGATAATATATTGTTCGGAAAAGAAATGAATTTGCACTTCTATACCAAGGTTCTCGAGGGATGTGCTCTCAACCAGGATTTACGCATGTGGAGTGATCAAGATATGAATCTGGTGGAGGAGAGGGGCGCAAACCTCAGTGGAGGGCAGAAACAGCGGGTTCAACTAGCAAGGGCAGTGTACAGTAACGCAGACATCTGTTTGCTGGATGATCCTTTTAGTGCTGTGGATGCACATACAAGAACCCATCTATTCCAGAGATGTCTTATGGATCTTCTACACGAGAAGACGGTTGTGTATGCTACCCATCAGCTGGAATTTTTGCAAGCTGCTGATCTCATTTTGGTAGTGGAAGATGGGAAAATAATAGAGTCAGGAGCGTACAATGATCTCATAGGATGCCCAAACAGCAAACTGATGCAACATATGGCTGCTCATGAAGAAGCAGTAAACCAAATAAATCCCTTCCAAGAAGATGATTCTGCTGGCTCCAGGCCCGGCCAAAAAGATCAAATTGAAGTGGTGGAAGAAAATGTACTCGGGACCATCATGGATAGGAAGAGAACCAAAGAAGAGGAAGCAATGACGGGTCGAGTGAAATGGAGTGTTTACTCGACCTTTGTCACTTCAGCTTATAGAGGAGCTTTAGTTCCCATTATTCTCCTATGTCATATCTCTTCCAAGGGCAGGGTGAGGGACGGGCATCTTATGGGAATCTATATTCTTCTGTCGAGTTCCAGCTCTATCTTCATTATGGGAAGGGCGATACTAATGTCGACAGTTGCTCTAGAGACTGCTGAGCGTCTTTTCCATGGAATGCTCACAACACTTTTCAGGGCACCTGTTGCATTTTTTGATGTCACACCTTCAAGCAGAATTATAAGTAGGGCATCAACAGATCAAAGCATAGTGGACATTGACTTGCCCTTCAGATTAGCTGGACTCGTATTTGCACTCATCCAGATATTGAGTATCATAATGCTAATGTCTTGGGCTATTTGGCAATGCTTTCTCCTCTTTGTTGTGGTTCTCGCTATCTCCATCTGGTATCAGGCCTATTACATCACTGCTGCCAGGGACTTAGCTAGGATGGTGGGGATTAAAAAGGCACCAATCTTGCATCACTTCTCAGAATCCATTGCTGGTGCTGCCACCATCCGTTGTTTCAATCAAGAGCAAACATTTATGACCAACAATATGGCTCTAATTGATGACTATTCTCGGGAATCCTTTTACAATGATGCCGCCATGGAATGGTTGTCAGTTAGAATCAATTTTCTCTTCAATTTGGTCTTCTATTTTGTTCTTGTAATCTTGGTCACTCTACCAAAGTCTGCCATTGGTCCCAGCATGGCAGGGCTGGTTGCTTCTTATGGCTTGACCTTGAATGAGCTTCAGGCTTGGGTGATAATGAATCTCTGCGGTGTGGAGAACAAAATAATATCGGTTGAGAGGATATTACAGTTCTCCAGCATACCAAGCGAAGCGCCATTAATCATTCAAGACTGCAGGCCTGAACCAGAGTGGCCTAGAGATGGAAAAATCGAATTCCACAAGCTTAATAAAATTGGAATAGTAGGCAGGACAGGGAGTGGAAAATCTACTCTGCTGCAAGCCCTATTTCGAATTGTGGAGCCTTTGTCAGGATGTATACTCATTGATGGAGTAGACATTTCCAAGATTGGCCTGCAAGATTTAAGAACTAAGATTGGCATAATTCCTCAGGATCCGACCTTATTTCTAGGTACCGTAAGGACAAACTTGGATCCTCTGGAACAACATACAGATCAAGAACTTTGGGAGGTTCTTAGAAAATGCCATCTCGCAGAAATAGTAAGGCAGGATCCAAGGCTTCTTGATGCACCAGTGGCTGAGAATGGAGAAAACTGGAGTGTTGGACAAAGGCAGCTTGTTTGCCTAGTCAGGTTGCTGCTTAAGAAACGAAAAATTCTGGTCCTCGATGAGGCAACCGCGTCCATTGACACTGCAACTGATAGTTTAATTCAGAAGACTATCAGGAAAGAAACAGAAGGATGCACTGTCATTACTGTAGCACACCGAATTCCAACTGTGATTGATAATGATTTTGTGTTGGTTCTTGATCAAGGGAAAATTGTGGAGTATAGCCAACCCAATCAATCGCTCCAGAACAGGTCTTCTGCATTCTCCAAGTTGGTGTCTGAGTTTTCCACAGCATCCCAGAAAAAATGA 4161 0.4227 MAIFDTLLAMTNVAFFYSILIWVLVDSLDGQSKGSYFIYSKQWPKLFTTITVLCNAVISLLNLAFVFYEYSTRRIVGYNSFSLALTWVMATVVSFYSMRAALRENNKRFPLVLMLWWFFATVTDIFSLSLELVRSDESVNFWIFNIVGIVSLPMLLLLCCNVLYGREQKQSDVGQQLLQKEVESPREETEEEIFTEASLWSKLTFRWLNPIINRGRVQTLELGHIPSVPHSETAESATSMLQESLCTSLTKAIIYSVLKSLAFNAVLAGMFSLIRFLLMYFYCDRSSIQHGLVLASVFFLSKTVESLSQRQCVFGASRIAIRTRSALMALVYNKSLSIKCVGPTHGKIINLINEDAERIGDAFKRFHEILMFPFQVITALIILYINLGPAPSLAACVVTLLVMVCSTPLTTMQKSCQSKIMEAKDSRIKVTSETMKNIRILKMQSWECTFLQKLLQLRDMERSWLQKFLHTKSAIVSLFWAAPTLVSIFSFGTCLIVKTELTTPRVLSALATFKILQDPIYKFPDLYSMITQALVSVKRVQEFLMEEDQNEFMNRHPPKTTSGLAIEINPSMYSWETNNQTNRKPTIQIVEKLIIQKGMKVAVCGPVGSGKSSLLSCMLGEIPLVSGEPTNIYGTTSYVAQSAWIQSGTIRDNILFGKEMNLHFYTKVLEGCALNQDLRMWSDQDMNLVEERGANLSGGQKQRVQLARAVYSNADICLLDDPFSAVDAHTRTHLFQRCLMDLLHEKTVVYATHQLEFLQAADLILVVEDGKIIESGAYNDLIGCPNSKLMQHMAAHEEAVNQINPFQEDDSAGSRPGQKDQIEVVEENVLGTIMDRKRTKEEEAMTGRVKWSVYSTFVTSAYRGALVPIILLCHISSKGRVRDGHLMGIYILLSSSSSIFIMGRAILMSTVALETAERLFHGMLTTLFRAPVAFFDVTPSSRIISRASTDQSIVDIDLPFRLAGLVFALIQILSIIMLMSWAIWQCFLLFVVVLAISIWYQAYYITAARDLARMVGIKKAPILHHFSESIAGAATIRCFNQEQTFMTNNMALIDDYSRESFYNDAAMEWLSVRINFLFNLVFYFVLVILVTLPKSAIGPSMAGLVASYGLTLNELQAWVIMNLCGVENKIISVERILQFSSIPSEAPLIIQDCRPEPEWPRDGKIEFHKLNKIGIVGRTGSGKSTLLQALFRIVEPLSGCILIDGVDISKIGLQDLRTKIGIIPQDPTLFLGTVRTNLDPLEQHTDQELWEVLRKCHLAEIVRQDPRLLDAPVAENGENWSVGQRQLVCLVRLLLKKRKILVLDEATASIDTATDSLIQKTIRKETEGCTVITVAHRIPTVIDNDFVLVLDQGKIVEYSQPNQSLQNRSSAFSKLVSEFSTASQKK* 1387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1264 1386 SMART AAA_5 597 779 IPR003593 -
Lja4g1264 1386 SMART AAA_5 1169 1354 IPR003593 -
Lja4g1264 1386 CDD ABC_6TM_ABCC_D1 273 540 IPR044746 GO:0140359
Lja4g1264 1386 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 110 1384 - -
Lja4g1264 1386 Gene3D ABC transporter type 1, transmembrane domain 833 1146 IPR036640 GO:0005524|GO:0016021
Lja4g1264 1386 PANTHER OS01G0902100 PROTEIN 110 1384 - -
Lja4g1264 1386 SUPERFAMILY ABC transporter transmembrane region 262 547 IPR036640 GO:0005524|GO:0016021
Lja4g1264 1386 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 566 794 IPR003439 GO:0005524
Lja4g1264 1386 ProSitePatterns ABC transporters family signature. 696 710 IPR017871 GO:0005524
Lja4g1264 1386 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 886 1128 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja4g1264 1386 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 592 783 IPR027417 -
Lja4g1264 1386 Pfam ABC transporter 1166 1308 IPR003439 GO:0005524
Lja4g1264 1386 Gene3D ABC transporter type 1, transmembrane domain 247 551 IPR036640 GO:0005524|GO:0016021
Lja4g1264 1386 Gene3D - 1150 1378 IPR027417 -
Lja4g1264 1386 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1137 1377 IPR003439 GO:0005524
Lja4g1264 1386 Pfam ABC transporter transmembrane region 318 519 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja4g1264 1386 Pfam ABC transporter transmembrane region 884 1092 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja4g1264 1386 CDD ABCC_MRP_domain1 566 771 - -
Lja4g1264 1386 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1165 1375 IPR027417 -
Lja4g1264 1386 Gene3D - 580 814 IPR027417 -
Lja4g1264 1386 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 260 532 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja4g1264 1386 Pfam ABC transporter 593 723 IPR003439 GO:0005524
Lja4g1264 1386 CDD ABCC_MRP_domain2 1163 1361 - -
Lja4g1264 1386 CDD ABC_6TM_ABCC_D2 886 1140 IPR044726 GO:0140359
Lja4g1264 1386 SUPERFAMILY ABC transporter transmembrane region 885 1145 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1264 Lja-Chr4 11216191 11221706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1264 584 802 Calmodulin-binding Proteins AT2G36910 27.984 2.06e-15 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1264 - - gmx:100809063 1825.83