Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1258 ATGTTTAGTCCGAGCATGGAATCTGCGAGGGATGCCGGTGGTGTTCCGGGGACGTTGCTAATCCCAATGCGGTTTGTGTGGCCGTATGGGGGAAGAACTGTGTATCTCACTGGTTCTTTCGCGCGGTGGTCTGAGCTTCTACAAATGTCGCCAGTTGAAGGCTGCCCAACTGTATTTCAAGTTATCCATAGCATGGCCCCTGGTTATCACCAGTACAAGTTTTTCGTTGATGGAGAATGGCGGCATGACGAGCATCAACCTTATATATCTGGAGAATATGGGATAGTTAACACTGTCTTATTGGCTACCGATCCTAATTTTGTACCTGTTTTAAATCCAAACTTAGTGTCTGGATCTAGCATGGATGTGGATAATGAGGCTTTTCGACGTGTGGTACGATTGACAGATGGTGCATTGAGTGAGGTGATGCCGAGAATATCAGATGTTGATGTACAGACATCACGTCAGCGTATTTCTGTATTTCTGTCTACACGCACAGCTTATGAATTACTTCCTGAGTCAGGCAAGGTTGTTACCTTGGATATTGATCTGCCAGTGAAACAGGCATTTCACATACTGCATGAGCAGGGAATTCCCATGGCTCCTCTTTGGGACTTCTGCAAGGGGCAGTTTGTTGGAGTTCTAAGTGCTATGGATTTTATTTTAATTTTAAGAGAGCTAGGAAATCACGGGTCCAATCTCACGGAAGAGGAGCTTGAAACACACACCATATCAGCTTGGAAAGAAGGGAAATGGACAGCATTTTCCAGACGTTTTATCCATGCGGGGCCATATGATAATTTGAATGATGTTGCTGTGAAGATCCTGCAAAATGAAATTTCAACAGTTCCTATCATCCATTCGTCTTCTGAAGATGGTTCATTTCCACAGCTACTTCATCTTGCTTCACTTTCGGGGATCCTTAAATGTATATGCAGGTATTTTAGGCATTGTTCTAGCTCATTGCCTATACTTCAACTTCCAATATGTGCAATTCCTGTGGGCACATGGGTGCCCAAAATTGGGGAGTCAAATCGCCGGCCGCTAGCGATGTTGAGACCTAGTGCTTCACTCACTTCGGCCCTAAACTTATTAGTTCAAGCTCAAGTAAGTTCAATACCAATAGTTGATGATAGTGACTCATTACTGGATATATATTGTCGGAGTGATATAACAGCTCTAGCAAAGGACAGAGCTTATACACATATTAACCTTGATGAGATGACTGTTCATCAGGCATTGCAGTTGGGCCAGGATTCTTATAATCCTTATGAGCTGAGAAGTCAAAGATGTCAGATGTGTTTGCGGACTGATCCGCTGCATAAAGTTATGGAACGGTTGGCAAACCCAGGTGTCCGGCGGCTTGTTATTGTGGAAGCTGGTAGCAAGCGTGTAGAAGGCATCATATCACTGAGTGACATATTCAAGTTCTTCCTTGGTTAG 1443 0.4401 MFSPSMESARDAGGVPGTLLIPMRFVWPYGGRTVYLTGSFARWSELLQMSPVEGCPTVFQVIHSMAPGYHQYKFFVDGEWRHDEHQPYISGEYGIVNTVLLATDPNFVPVLNPNLVSGSSMDVDNEAFRRVVRLTDGALSEVMPRISDVDVQTSRQRISVFLSTRTAYELLPESGKVVTLDIDLPVKQAFHILHEQGIPMAPLWDFCKGQFVGVLSAMDFILILRELGNHGSNLTEEELETHTISAWKEGKWTAFSRRFIHAGPYDNLNDVAVKILQNEISTVPIIHSSSEDGSFPQLLHLASLSGILKCICRYFRHCSSSLPILQLPICAIPVGTWVPKIGESNRRPLAMLRPSASLTSALNLLVQAQVSSIPIVDDSDSLLDIYCRSDITALAKDRAYTHINLDEMTVHQALQLGQDSYNPYELRSQRCQMCLRTDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDIFKFFLG* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1258 480 CDD E_set_AMPKbeta_like_N 22 100 - -
Lja4g1258 480 ProSiteProfiles CBS domain profile. 426 480 IPR000644 -
Lja4g1258 480 ProSiteProfiles CBS domain profile. 170 232 IPR000644 -
Lja4g1258 480 SMART cbs_1 430 479 IPR000644 -
Lja4g1258 480 SMART cbs_1 348 396 IPR000644 -
Lja4g1258 480 SMART cbs_1 176 225 IPR000644 -
Lja4g1258 480 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 16 480 - -
Lja4g1258 480 SUPERFAMILY CBS-domain pair 345 479 IPR046342 -
Lja4g1258 480 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 16 480 - -
Lja4g1258 480 Gene3D Immunoglobulins 18 101 IPR013783 -
Lja4g1258 480 Pfam Glycogen recognition site of AMP-activated protein kinase 21 104 IPR032640 -
Lja4g1258 480 Pfam CBS domain 346 392 IPR000644 -
Lja4g1258 480 Pfam CBS domain 433 479 IPR000644 -
Lja4g1258 480 Gene3D - 147 320 IPR046342 -
Lja4g1258 480 Gene3D - 328 480 IPR046342 -
Lja4g1258 480 SUPERFAMILY E set domains 21 102 IPR014756 -
Lja4g1258 480 ProSiteProfiles CBS domain profile. 344 401 IPR000644 -
Lja4g1258 480 SUPERFAMILY CBS-domain pair 156 317 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1258 Lja-Chr4 11100595 11106786 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1258 - - aprc:113874669 877.856
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1258 4 11100595 11106786 Lja4g1258 4 11100595 11106786 ECH
Lja4g1258 4 11100595 11106786 Lja6g2203 6 51004306 51010629 PCT