Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1257 ATGGCCCCTTCTAGGAAATCTAGAAGTGTAAAAAAGAAGCTTTCTAATATTCATGAGGCTGCATCCAGTAGAGATAAAGATGCTGCGAATGTTGTCAAGACTAGGCAGAAGGCAAGTGCTGGTGTTCAGAAGAAGAGAAAATTGGCTGATATGTTAGGGCCACAGTGGAGTAAGGAGGAGCTTGAGCGTTTCTATGAAGCTTACCGTAAATATGGGAAGGATTGGAAGAAGGTTGCTCTTGCAGTACGTAATAGATCTATGGAAATGGTAGAAGCCCTGTACACGATGAACAGGGCATACTTATCTCTTCCAGAGGGAACTGCTTCTGTTATTGGACTGATAGCAATGATGACAGACCATTACAGTGTACTGGGAGGAAGTGACAGTGGTAAAGAAAGCAATGAAGATGCAGGAAAACCTAAAAAGTCTCAAAAGCGTTTGCGAGGAAAGCATCTAAATGACAATAAAGCATTAGATGGACACTTTTCAGATCATTCTCAGTCACATTCTGTTGCATCAGGTGATGATGGTTGCCTGTCATTGTTGAAGAAAAGGCATTCTGGAATTAAGCCTCATGCTGTTCGAAAAAGGACTCCCCGCATCCCTATTTCATATTCTATTGGTAAAGATAATGGGGAGAAGTTATTTTCACTCGCTAGGCAGGGATCCAAACAAATGGTTGATACTAATGATGTTGCTCATAAGATTGCATTAGCATTGACAGAGGCTTCACAAAGAGGCGGTGGCTCTTCAAAAATTTCTGGATCACCAAACAAGAAAAACATGCCATCATCTGATCTGAAAAGTGGGAAGAAGCATGTTAAATCAGAAATGGCTGAAGCCAAGCTTTGCAGTTCTGACATGGATGAGCGTAGTTCTGAGTTGAGTTTAGGAAGCACAGAAGGTGACAATGGAGATTATTCTAGAAAAACAATTCATCGTAGCAGTAGAGAAAATACTAGAAGAGGAAGGACTCAGGAAAAGGGAATAAGACGCTATGAGATGAATTTAGAACCTGTGAAAAATGTCAACAAGCATCTGAGTGACATAAAGGAGGCCTCCAGTGGGACCGATGATGGTAAAAATTTGAATTTCATCAAATCCAAGTTTGACACAGATTTTGCAGATGCAAAAAATGCACGGTCGTGCTACAAGGGTTCCAGGAAAAAAAGTAAAAAATTACTGTCTGAGAAAGATGAAAGTTCTGCTTTTGATGCTCTGAACGCTTTGGCTGATCTGTCTTTGATGATGCCAGCAACAAACCCTGACTCTGAGTCATCTGCACAAGTCAAGGAAGGAAACCATGATGTCATTGATGAGTCTAAAGTGGAAACACGTAATGTATTTCCTAGGCTCGAAAGCACTGCTTCAAGTAAATTGGGTAAAAATGGAGCTGCCGCTCCTGAAGCAGAGGCAGCATACCAGCGTAATGTAGGAAACAGGAAAAGAAAACAAAGACCCTTTACCTCAAAAAATGATGAAGTACATACTGGTTCTCATTTAAGTGGTTCCCCAAAAACAAAGGTTACTGATGAGGTGAAAAAGTTTGTGGTTAAAGGCAAGCGATCATCTGTCTCTACAGCGCATTCTAGACAAATGAAACCACCCAAAAATATGTCTTCAAGTGCTAGTGACAAAGGGGAAAGGGATGGTTCATCTTTTTCTCCAATAAAGGTCTCATCTACTTACCAAGTCAGTCAAGTCAACAGAGTAAGGCCTATAAGAAAGATGATAAAACCAAAACAAATGGTACAGTCAAGTCAACAAAATAATTTCATTGCTTCGCTGCAGAATAATTCTTATAGTCAGACGGGAAAGCTTATTAATTGCTTGTCTTCGTATCAAATGCGGCGATGGTGCACTTTTGAGTGGTTTTATAGTGCTATTGATTACCCATGGTTTTCAAAGAGAGAGTTTGTGGAGTACTTAGACCATGTTGGATTGGGTCATGTTCCCAGATTGACTCGTATTGAATGGGGAGTCATTAGAAGTTCTCTTGGTAGACCACGGAGATTTTCAAGGCAATTTTTGAAGGAAGAAAAACATAAACTTAATCAATACCGGGAATCTGTCAGATCACATTATGCTGAATTTTTTGCTGGTACCAAGGAAGTCCTTCCTCCTGATCTGGCTCAGCCATTAATCGTAGGGCAACGTATTGTTGCTGTTCATCCCAAGACAAGAGAGATTCATGATGGAAGTATTTTGACTGTAGACCATCGAAGGTGCCGAGTTCAGTTTGACCAGCCTGAACTTGGGGTTGAATTTGTCATGGATATTGACTGCATGCCTTTGTATCCATCTGAAAATATGCCCACATCTCTGATAAGACATGGCATCTCTCCTGCTAGAATAAATGAGAATCTTAATGAGCTAGAGCGTAATGGTAAAGTAAAACAAAGAAAGATTCCTGAGCACAGAAAATTTCCCCCTAGGGAGAACACAGACACCAGTAAAGGTTTCTACTCTATGCATGGAAGCAGTACTTTATCAAAACAGGGGTTTTCTTCAAGCTGCAAATCACTAGCGAAAGCTGCGTGCTGTGAGATCGGTAATGCCCAACTAGAATCAATTCCTCAACCCTCTCATCTTGAACACGTCCATTCAAAAGAAGCGGACATATTAGCTATTTCAGAGTTGACTCGTGCTCTAGACAAGAAGGAACTTGTGTTGTCTGAACTGAAGCATATGAATGAAGGGGTATCAGAAGATCCGCAATATGGAGACAAGTCATTAAGAGATTCAGAACCTTTTAAGAGGAATTATGCTTCAGTGCTAAAGCAATTAACGGAAGCGAATGAACAGGTTTCTTCTGCCTTGTTTTGCTTGAGACAACGCAACACATATCAAGTAAGCTCTTCACTGTTGTCATTAAAGCCCATGGCTAATTTTGATGATGGTGGTCAGGCTAGCTCTTCAAATTGTTCTGCTTGCCACAACCAGGAATCTATATCTCAAAGTCATATAGCTGATATCGTTGAAAGTTCTAGAAGAAAAGCCCAAACCATGGTTGTTCAAGCTATTCAGGCTATGTCAGTTATTAGAAAGACAGAAAGTAAGGTTGAAAGAATTGAGGATGCAATAAATTTTATCAATAATCGGCTTTCTGTTGATGACCCTACTGCTTCAGCCACAAATTTTCCGCCCAGAGATTCAGTTACTTTGGCTTCTCGCGATCAATTGACGGCCACCACATTGAATCCCTTGGAAAGTTATCTTGTACAATATGCTGAACTTAACAGTTCATCAGACCAAAACGAAATGAAAATTCCCTCAGAACTCATATCTCACTGTCTAGCTACACTGCTCATGATTCAGAAATGTACGGAACGGCAATTTCCCCCTGCTGATGTTGCTCAGGTACTAGATTCTGCTGTCACCAGTTTGCAGCCATTTTGTTCAAAGAATCTCCCAGTATATAGTGAGATACAGAAATGCATGGGTATCATAAGAAATCAGATATTGGCACTCGTACCAACCTAG 3483 0.4063 MAPSRKSRSVKKKLSNIHEAASSRDKDAANVVKTRQKASAGVQKKRKLADMLGPQWSKEELERFYEAYRKYGKDWKKVALAVRNRSMEMVEALYTMNRAYLSLPEGTASVIGLIAMMTDHYSVLGGSDSGKESNEDAGKPKKSQKRLRGKHLNDNKALDGHFSDHSQSHSVASGDDGCLSLLKKRHSGIKPHAVRKRTPRIPISYSIGKDNGEKLFSLARQGSKQMVDTNDVAHKIALALTEASQRGGGSSKISGSPNKKNMPSSDLKSGKKHVKSEMAEAKLCSSDMDERSSELSLGSTEGDNGDYSRKTIHRSSRENTRRGRTQEKGIRRYEMNLEPVKNVNKHLSDIKEASSGTDDGKNLNFIKSKFDTDFADAKNARSCYKGSRKKSKKLLSEKDESSAFDALNALADLSLMMPATNPDSESSAQVKEGNHDVIDESKVETRNVFPRLESTASSKLGKNGAAAPEAEAAYQRNVGNRKRKQRPFTSKNDEVHTGSHLSGSPKTKVTDEVKKFVVKGKRSSVSTAHSRQMKPPKNMSSSASDKGERDGSSFSPIKVSSTYQVSQVNRVRPIRKMIKPKQMVQSSQQNNFIASLQNNSYSQTGKLINCLSSYQMRRWCTFEWFYSAIDYPWFSKREFVEYLDHVGLGHVPRLTRIEWGVIRSSLGRPRRFSRQFLKEEKHKLNQYRESVRSHYAEFFAGTKEVLPPDLAQPLIVGQRIVAVHPKTREIHDGSILTVDHRRCRVQFDQPELGVEFVMDIDCMPLYPSENMPTSLIRHGISPARINENLNELERNGKVKQRKIPEHRKFPPRENTDTSKGFYSMHGSSTLSKQGFSSSCKSLAKAACCEIGNAQLESIPQPSHLEHVHSKEADILAISELTRALDKKELVLSELKHMNEGVSEDPQYGDKSLRDSEPFKRNYASVLKQLTEANEQVSSALFCLRQRNTYQVSSSLLSLKPMANFDDGGQASSSNCSACHNQESISQSHIADIVESSRRKAQTMVVQAIQAMSVIRKTESKVERIEDAINFINNRLSVDDPTASATNFPPRDSVTLASRDQLTATTLNPLESYLVQYAELNSSSDQNEMKIPSELISHCLATLLMIQKCTERQFPPADVAQVLDSAVTSLQPFCSKNLPVYSEIQKCMGIIRNQILALVPT* 1161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1257 1160 Coils Coil 1014 1034 - -
Lja4g1257 1160 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1 1160 IPR028306 -
Lja4g1257 1160 MobiDBLite consensus disorder prediction 429 447 - -
Lja4g1257 1160 MobiDBLite consensus disorder prediction 13 32 - -
Lja4g1257 1160 MobiDBLite consensus disorder prediction 419 556 - -
Lja4g1257 1160 MobiDBLite consensus disorder prediction 244 264 - -
Lja4g1257 1160 Coils Coil 677 697 - -
Lja4g1257 1160 ProSiteProfiles SANT domain profile. 51 88 IPR017884 -
Lja4g1257 1160 PANTHER LIN-9 1 1160 IPR010561 GO:0006351|GO:0017053
Lja4g1257 1160 Pfam Myb-like DNA-binding domain 55 90 IPR001005 -
Lja4g1257 1160 SMART sant 52 100 IPR001005 -
Lja4g1257 1160 SUPERFAMILY Homeodomain-like 52 99 IPR009057 -
Lja4g1257 1160 MobiDBLite consensus disorder prediction 243 328 - -
Lja4g1257 1160 CDD SANT 56 90 IPR001005 -
Lja4g1257 1160 MobiDBLite consensus disorder prediction 1 46 - -
Lja4g1257 1160 SMART DIRP_2 625 726 IPR033471 -
Lja4g1257 1160 Pfam DIRP 624 725 IPR033471 -
Lja4g1257 1160 MobiDBLite consensus disorder prediction 126 174 - -
Lja4g1257 1160 MobiDBLite consensus disorder prediction 306 328 - -
Lja4g1257 1160 MobiDBLite consensus disorder prediction 265 289 - -
Lja4g1257 1160 MobiDBLite consensus disorder prediction 523 556 - -
Lja4g1257 1160 Gene3D - 2 108 - -
Lja4g1257 1160 MobiDBLite consensus disorder prediction 290 305 - -
Lja4g1257 1160 Coils Coil 877 897 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1257 Lja-Chr4 11085926 11099251 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja4g1257 DIRP 7.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1257 - - gmx:100781646 1735.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1257 4 11085926 11099251 Lja4g1257 4 11085926 11099251 ECH