Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1256 ATGTCACTGACAAGAGCCTTGTCAACCCTAAAATGTTTTCCCCTTCGGACACTGCAATTCTGCACCACCACCACCGCCGCCGCCGCCTCCACCCATGATTCTGACCGACATTCTTTCACAGTGTCCTACCTCGCCAACAACTGTGGCTTCTCCCCTGAAACCGCCGCCAAAGCAACCCACAGGATTCGTCTCCGCAGCAATCAAAACCCCGATTCAGTCCTCGCCTTCTTCAGGAGCCACGGTTTCTCCGACTCCCAAACGCACGGCATCATCAGAAGGGCACCATGGCTGCTCTCGTACAACTCCAACAAGGTACTGTTGCCAAAGTTTGAATTTCTACGCTCTAAAGGTGCCTCTACCTCTGAAATTGTTCGCATCGTTAGCGGTAGCCCTAGGATCCTTTCATGCAGCTTGCAGAACCACATAATCCCTGCATTTCAATTCCTAAGAAGGTTTCTCCAATCTGATTATCAATTCATTGCTTGTATGATTCGTAACTCTACTTTTCTCAATGGTTGTTATGTCAAACTTAATGTGGAATTGTTGGTTGATCATGGAGTTACTCGCTCAAACATTGCCAGGTTATTGCGCCAATGGCCTACTATACTTTGTTCATCTGACTTGGTGAAAACTGTTGAGGAGTTGAAGCAAATGGGTTTCAGTCCTTCAGCTTCAGTTTTTTCCTTTGCATTGCTTGCCAAGAAAACTGTGAATGAAGCACTGTGGGCTGAGAAAGTTGACACCTATAAGAGGTGGGGTTGGTCTGAAGAACATGTTCTTCAAGTGTTTAAGAAGGACCCTTATTGTATGATGTCATCCTGTGATAAAATCAATGCAGTTATGAGTTTTTGGGTTGATGAGTTAGGTTGGAATCCTTTGGACCTTCTCAAGGCTCCAACAATTATTAGAATGAGCCTCGAGAAGAGGATTGTTCCGAGGGCTTCGGTCGTGCAGTTTCTTACCGCACAAGGGCTGCGAAAAAAGGATGCCTCCGTAATTGTGCCTTTCAAATTAACTGAGGAGTTGTTTCTGGAAAAGTTTGTCAAGTGTTTTAAGGAGGATTCTTATCATCTGTTAACGCTCTATGAGGAAAAGATGAATCTTGCAGATAGAAAGGAGAAGCCTCCATCAAGTGGGTGA 1140 0.4526 MSLTRALSTLKCFPLRTLQFCTTTTAAAASTHDSDRHSFTVSYLANNCGFSPETAAKATHRIRLRSNQNPDSVLAFFRSHGFSDSQTHGIIRRAPWLLSYNSNKVLLPKFEFLRSKGASTSEIVRIVSGSPRILSCSLQNHIIPAFQFLRRFLQSDYQFIACMIRNSTFLNGCYVKLNVELLVDHGVTRSNIARLLRQWPTILCSSDLVKTVEELKQMGFSPSASVFSFALLAKKTVNEALWAEKVDTYKRWGWSEEHVLQVFKKDPYCMMSSCDKINAVMSFWVDELGWNPLDLLKAPTIIRMSLEKRIVPRASVVQFLTAQGLRKKDASVIVPFKLTEELFLEKFVKCFKEDSYHLLTLYEEKMNLADRKEKPPSSG* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1256 379 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 16 371 - -
Lja4g1256 379 SMART mt_12 260 291 IPR003690 GO:0003690|GO:0006355
Lja4g1256 379 SMART mt_12 88 119 IPR003690 GO:0003690|GO:0006355
Lja4g1256 379 SMART mt_12 124 155 IPR003690 GO:0003690|GO:0006355
Lja4g1256 379 SMART mt_12 292 326 IPR003690 GO:0003690|GO:0006355
Lja4g1256 379 SMART mt_12 193 221 IPR003690 GO:0003690|GO:0006355
Lja4g1256 379 Pfam mTERF 178 343 IPR003690 GO:0003690|GO:0006355
Lja4g1256 379 Pfam mTERF 74 277 IPR003690 GO:0003690|GO:0006355
Lja4g1256 379 Gene3D Transcription termination factor 3, mitochondrial 158 357 IPR038538 -
Lja4g1256 379 PANTHER CGI-12 PROTEIN-RELATED 16 371 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1256 Lja-Chr4 11079743 11081236 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lja4g1256 mTERF 6.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1256 K15032 - gmx:102667698 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1256 4 11079743 11081236 Lja4g1256 4 11079743 11081236 ECH