Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1255 ATGGACCGGTACGGCGGGTCGCAGTCGCAGTCTGATCCGTCGCCGGAATGGCCCCTCGCCGCCGGAGAAACCGCCCTCGAAGAGCCGGTGTGGCAACTGGGATTGAGTGGTGGTGGTGAATCGTACCCTCTCCGTCCCGATGAGGCTGATTGTATCTACTATCTGAGAACTGGTTATTGTGGTTACGGCTCGCGGTGTCGGTTCAATCATCCCCGTGACCGTGGCGCGGTTATTGGAGCTGCGAGGACTGGGGGGGAGTATCCGGAAAGAGCAGGACAGCCTGTGTGTCAGTACTATATGAGGACGGGATCATGCAAATTTGGTTCATCTTGCAAGTACCACCATCCTAGGCAGCCATCAGGCACTACTACTCCTGTGTCACTAAATTATCATGGATATCCATTGCGAATGGGTCAGAAAGAGTGTTCCTATTATGTGAAAACTGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCACAGCCTGCCGGTGGCCAAATGCTAGCACCATCGCCAGTTCCCTCTGTTTCACCGCTGCCTGTACCGGTGCCTTCACCAGTTTATCAAACTGGACAGCCTCCATCTGGTCCTTCATCACAACAATATGGCGTACTGGTCGCAAGGCCACCTCTGCTCCCTGGCTCATTTGTCCAGGGCCCCTATGGGCCAATGGTATTGTCCCCTGCCATGTACCCTCTCTCCAGCTGGGGTCCGTATCAGGCTCCTGCAAGTCCTGTAGTTCCTTCCAGTAGTCCGTCTAATGTTGGTTCAACACAGTTTAATGTTGGTTCAACACAGTTTTATGGGATTACCCATTTACCTTCACCAACAAGTGCCTATGGTGGACCATATCAAACTACGGTTTCATCAATCGGTCCTTCAGGCAGTAGCCAGAAGGAGCACACATTACCAGAAAGGCCTGACCAACCAGAATGCCATTATTACATGAAAACAGGGGAGTGTAAATTTGGTCAATCATGTAGATATCATCATCCACCAGATATGGGTGCGTCAAAGGCAAATGTTAACCTTAGTCCTGTGGGTCTTCCTTTGCGCCCGGGGGCACCACCTTGCACTCATTATACACAGCGTGGAATTTGTAAGTTTGGTTCTGCGTGCAAATTTGATCATCCGATTGGATCGCTGAGTTACAGCCCATCTGCTTCTTCCCTGGCTGATATGCCGGTTGCACCCTATCCTGTGGGTTCCTCAATTGGTACTCTTGCCCCATCATCTTCTTCATCAGAGTTGCGGCCTGAACTTGCCCCTGGATCCAGCAAGGAGCCAGTTTCGTCCAGAATGTCTTCATCAATGAGCACATCTACTGGATCAGTTGGCTTGACCTTGTCAACTGCTGGACCCATTTCTCAATCAAGCACTCTGCAATCTGCTCCGAGTTCCAGTTCTTTAGCAACTACAACCAGTGCCACATCAAGTAGCACTGTCTCTCAAAGTTCAAGCTAG 1470 0.5068 MDRYGGSQSQSDPSPEWPLAAGETALEEPVWQLGLSGGGESYPLRPDEADCIYYLRTGYCGYGSRCRFNHPRDRGAVIGAARTGGEYPERAGQPVCQYYMRTGSCKFGSSCKYHHPRQPSGTTTPVSLNYHGYPLRMGQKECSYYVKTGQCKFGATCKFHHPQPAGGQMLAPSPVPSVSPLPVPVPSPVYQTGQPPSGPSSQQYGVLVARPPLLPGSFVQGPYGPMVLSPAMYPLSSWGPYQAPASPVVPSSSPSNVGSTQFNVGSTQFYGITHLPSPTSAYGGPYQTTVSSIGPSGSSQKEHTLPERPDQPECHYYMKTGECKFGQSCRYHHPPDMGASKANVNLSPVGLPLRPGAPPCTHYTQRGICKFGSACKFDHPIGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELAPGSSKEPVSSRMSSSMSTSTGSVGLTLSTAGPISQSSTLQSAPSSSSLATTTSATSSSTVSQSSS* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1255 489 MobiDBLite consensus disorder prediction 1 15 - -
Lja4g1255 489 ProSiteProfiles Zinc finger C3H1-type profile. 308 336 IPR000571 GO:0046872
Lja4g1255 489 ProSiteProfiles Zinc finger C3H1-type profile. 354 382 IPR000571 GO:0046872
Lja4g1255 489 MobiDBLite consensus disorder prediction 291 310 - -
Lja4g1255 489 SUPERFAMILY CCCH zinc finger 48 73 IPR036855 GO:0046872
Lja4g1255 489 SUPERFAMILY CCCH zinc finger 358 384 IPR036855 GO:0046872
Lja4g1255 489 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 47 72 IPR000571 GO:0046872
Lja4g1255 489 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 310 335 IPR000571 GO:0046872
Lja4g1255 489 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 163 IPR000571 GO:0046872
Lja4g1255 489 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 93 117 IPR000571 GO:0046872
Lja4g1255 489 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 357 380 IPR000571 GO:0046872
Lja4g1255 489 Gene3D - 300 349 - -
Lja4g1255 489 Gene3D - 45 122 - -
Lja4g1255 489 MobiDBLite consensus disorder prediction 410 489 - -
Lja4g1255 489 ProSiteProfiles Zinc finger C3H1-type profile. 90 118 IPR000571 GO:0046872
Lja4g1255 489 PANTHER PROTEIN PHOSPHATASE RELATED 1 477 - -
Lja4g1255 489 MobiDBLite consensus disorder prediction 430 489 - -
Lja4g1255 489 MobiDBLite consensus disorder prediction 1 21 - -
Lja4g1255 489 ProSiteProfiles Zinc finger C3H1-type profile. 45 73 IPR000571 GO:0046872
Lja4g1255 489 SUPERFAMILY CCCH zinc finger 311 336 IPR036855 GO:0046872
Lja4g1255 489 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 477 - -
Lja4g1255 489 SMART c3hfinal6 136 163 IPR000571 GO:0046872
Lja4g1255 489 SMART c3hfinal6 308 335 IPR000571 GO:0046872
Lja4g1255 489 SMART c3hfinal6 90 117 IPR000571 GO:0046872
Lja4g1255 489 SMART c3hfinal6 45 72 IPR000571 GO:0046872
Lja4g1255 489 SMART c3hfinal6 354 381 IPR000571 GO:0046872
Lja4g1255 489 SUPERFAMILY CCCH zinc finger 136 164 IPR036855 GO:0046872
Lja4g1255 489 Gene3D - 354 402 - -
Lja4g1255 489 Gene3D - 123 172 - -
Lja4g1255 489 SUPERFAMILY CCCH zinc finger 93 118 IPR036855 GO:0046872
Lja4g1255 489 ProSiteProfiles Zinc finger C3H1-type profile. 136 164 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1255 Lja-Chr4 11067946 11073031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1255 1 456 C2H2 Transcription Factor Family AT5G18550 56.290 1.11e-149 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja4g1255 zf-CCCH 6.3e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1255 - - gmx:100789405 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1255 4 11067946 11073031 Lja4g1255 4 11067946 11073031 ECH
Lja4g1255 4 11067946 11073031 Lja6g2817 6 57273802 57279005 PCT