Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1254 ATGTCAACCTCTAAAACCTCCTTCAAAGGATCATCATATGATCCAAGTCAAACCCAAATGTGCCTATCTCTTCTTCAAAGAAACACTTCTCCTTGTGGTGAGAGAAGAGGTAAGAGGAAGCAAGCAGAACCAGGAAGGTTTCTTGGTGTTAGGAGAAGACCATGGGGTCGCTATGCCGCTGAAATCAGAGACCCTTCAACCAAAGAGAGGCATTGGCTTGGCACATTTGACACTGCTCAAGAAGCTGCTCTGGCTTATGACAGAGCTGCTCTGTCCATGAAAGGAAGCCAAGCAAGAACCAACTTTGTTTACTCTGACATCAATTTCCAACCTCTTATAGCCACTACTCCTATGGATGATGTTAGAGTTCAAGCTCTCTTGCCAGCTTCAGAGCTACTCACTCACACTACTCAGAGAAAACAACAAATAACCAATCAGAATAGCATGTCTCAGCTTGACAATGCTCACAGTGAAAAAAAGTCAAACACCATATGTGCTGAAACTTCATATGGGTCAGTTCAGGATGAAAATTTCTTCTTTTCCAATGATTCTAATAACTCTGGTTATCTGGAATGCATAGTTCCTGATAATTGTTTCAGACCTACTTCAAGTGATCAAAAGATTAGCACAATTTCTATGGAGAGTGCTAATCAGCTAAATGTTGGCATGGCTTCATTCTCTGAAGAAGCCACAAAAATGCCACCACGTTCTAGCTTTTCAGAGTTTTCTTATCCAAGTGAAGGTTTCTGGGAGGATCAGCATTCATGGGATTGGAGTTCCAATGAACTTTCAGCTATATTTAACAACCCATTAAGGGTTGAAGATAGGTGCATGGATACATTATATGAGTATCAAATCACTGACTGTCCAAGCTATGGGCTAATGAACCAGATTGCTTCTTCATCAGCAACCTGTTCTCCATCATTTCCACCCTTTGGTGGGGATGTAGACTTGGGATACCCACTCTTCTGA 972 0.4177 MSTSKTSFKGSSYDPSQTQMCLSLLQRNTSPCGERRGKRKQAEPGRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAQEAALAYDRAALSMKGSQARTNFVYSDINFQPLIATTPMDDVRVQALLPASELLTHTTQRKQQITNQNSMSQLDNAHSEKKSNTICAETSYGSVQDENFFFSNDSNNSGYLECIVPDNCFRPTSSDQKISTISMESANQLNVGMASFSEEATKMPPRSSFSEFSYPSEGFWEDQHSWDWSSNELSAIFNNPLRVEDRCMDTLYEYQITDCPSYGLMNQIASSSATCSPSFPPFGGDVDLGYPLF* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1254 323 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
Lja4g1254 323 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Lja4g1254 323 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 2 323 - -
Lja4g1254 323 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Lja4g1254 323 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Lja4g1254 323 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Lja4g1254 323 MobiDBLite consensus disorder prediction 137 160 - -
Lja4g1254 323 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 2 323 - -
Lja4g1254 323 Pfam AP2 domain 49 95 IPR001471 GO:0003700|GO:0006355
Lja4g1254 323 SUPERFAMILY DNA-binding domain 47 104 IPR016177 GO:0003677
Lja4g1254 323 CDD AP2 46 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1254 Lja-Chr4 11062453 11063424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1254 1 269 AP2-EREBP Transcription Factor Family AT5G18560 40.127 1.17e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja4g1254 AP2 1.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1254 - - gmx:100812047 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1254 4 11062453 11063424 Lja6g2816 6 57270670 57271608 PCT